Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 MIR3180-5-201ENST00000583743 153 ntBASIC18.31■□□□□ 0.52
VRK3Q8IV63 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 WIZP1-201ENST00000531444 2299 ntBASIC18.3■□□□□ 0.52
VRK3Q8IV63 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 MIR564-202ENST00000385049 94 ntBASIC18.3■□□□□ 0.52
VRK3Q8IV63 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VRK3Q8IV63 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.3■□□□□ 0.52
VRK3Q8IV63 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 HMGA1P5-201ENST00000412453 271 ntBASIC18.29■□□□□ 0.52
VRK3Q8IV63 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 SLC25A3P1-201ENST00000443844 931 ntBASIC18.29■□□□□ 0.52
VRK3Q8IV63 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.29■□□□□ 0.52
VRK3Q8IV63 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VRK3Q8IV63 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 ECEL1P3-201ENST00000427961 737 ntBASIC18.28■□□□□ 0.52
VRK3Q8IV63 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 AC010203.1-204ENST00000548782 407 ntBASIC18.28■□□□□ 0.52
VRK3Q8IV63 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms