Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 AC105020.1-201ENST00000435356 2205 ntBASIC11.74□□□□□ -0.53
LINC00643Q86TS7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 AL365209.1-201ENST00000624418 6473 ntBASIC11.73□□□□□ -0.53
LINC00643Q86TS7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 AC007029.1-201ENST00000604183 313 ntBASIC11.73□□□□□ -0.53
LINC00643Q86TS7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00643Q86TS7 TCAF2P1-201ENST00000291129 2421 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 AC099063.4-201ENST00000641099 1602 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 LINC02199-201ENST00000506655 2702 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FLJ16779-201ENST00000612722 7638 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms