Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC008622.2-201ENST00000617006 1229 ntBASIC21.72■■□□□ 1.07
KRT40Q6A162 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT40Q6A162 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT40Q6A162 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.72■■□□□ 1.07
KRT40Q6A162 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT40Q6A162 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
KRT40Q6A162 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
KRT40Q6A162 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.72■■□□□ 1.07
KRT40Q6A162 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 AC104581.1-202ENST00000635932 2618 ntBASIC21.71■■□□□ 1.07
KRT40Q6A162 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.71■■□□□ 1.07
KRT40Q6A162 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.71■■□□□ 1.07
KRT40Q6A162 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 LINC01568-207ENST00000641790 1380 ntBASIC21.71■■□□□ 1.07
KRT40Q6A162 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.71■■□□□ 1.07
KRT40Q6A162 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.71■■□□□ 1.07
KRT40Q6A162 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
KRT40Q6A162 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
KRT40Q6A162 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.07
KRT40Q6A162 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.7■■□□□ 1.07
KRT40Q6A162 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
KRT40Q6A162 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.7■■□□□ 1.06
KRT40Q6A162 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 TERF1P1-201ENST00000311003 1181 ntBASIC21.7■■□□□ 1.06
KRT40Q6A162 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT40Q6A162 MIR1238-201ENST00000408483 83 ntBASIC21.7■■□□□ 1.06
KRT40Q6A162 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
KRT40Q6A162 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT40Q6A162 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
KRT40Q6A162 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT40Q6A162 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.7■■□□□ 1.06
KRT40Q6A162 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 CYP2D8P-201ENST00000433633 1490 ntBASIC21.7■■□□□ 1.06
KRT40Q6A162 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.7■■□□□ 1.06
KRT40Q6A162 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
KRT40Q6A162 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT40Q6A162 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT40Q6A162 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 CRYGFP-201ENST00000418459 633 ntBASIC21.69■■□□□ 1.06
KRT40Q6A162 AL390955.1-201ENST00000428694 934 ntBASIC21.69■■□□□ 1.06
KRT40Q6A162 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.69■■□□□ 1.06
KRT40Q6A162 AC104076.2-201ENST00000448912 469 ntBASIC21.69■■□□□ 1.06
KRT40Q6A162 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT40Q6A162 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.69■■□□□ 1.06
KRT40Q6A162 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.69■■□□□ 1.06
KRT40Q6A162 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.69■■□□□ 1.06
KRT40Q6A162 AC009113.1-201ENST00000570267 2443 ntBASIC21.69■■□□□ 1.06
KRT40Q6A162 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT40Q6A162 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT40Q6A162 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT40Q6A162 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT40Q6A162 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
KRT40Q6A162 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
KRT40Q6A162 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms