Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 AC026366.1-201ENST00000488803 879 ntBASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 AC008764.6-201ENST00000595909 2069 ntBASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.7■□□□□ 0.42
LRIF1Q5T3J3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 AC004980.1-204ENST00000429707 299 ntBASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 AL357033.4-201ENST00000617703 1807 ntBASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.69■□□□□ 0.42
LRIF1Q5T3J3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 KRASP1-201ENST00000407852 552 ntBASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AC131212.4-201ENST00000623606 975 ntBASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 AL023875.1-201ENST00000640777 796 ntBASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LRIF1Q5T3J3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 AC239809.2-201ENST00000415381 517 ntBASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 AC135776.1-201ENST00000319817 2481 ntBASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
LRIF1Q5T3J3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms