Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 AC008040.2-201ENST00000461049 708 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.18■□□□□ 0.5
FOXA1P55317 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 PRSS44-201ENST00000515154 1146 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 MIR4651-201ENST00000582622 73 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.18■□□□□ 0.5
FOXA1P55317 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXA1P55317 AIRN-201ENST00000601203 4374 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.17■□□□□ 0.5
FOXA1P55317 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.17■□□□□ 0.5
FOXA1P55317 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.17■□□□□ 0.5
FOXA1P55317 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 PCDHB18P-201ENST00000524813 2368 ntBASIC18.17■□□□□ 0.5
FOXA1P55317 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 AL357033.4-201ENST00000617703 1807 ntBASIC18.17■□□□□ 0.5
FOXA1P55317 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.17■□□□□ 0.5
FOXA1P55317 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.17■□□□□ 0.5
FOXA1P55317 AC128676.1-201ENST00000454392 318 ntBASIC18.17■□□□□ 0.5
FOXA1P55317 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
FOXA1P55317 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 AL353708.3-201ENST00000610272 989 ntBASIC18.17■□□□□ 0.5
FOXA1P55317 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
FOXA1P55317 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
FOXA1P55317 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXA1P55317 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
FOXA1P55317 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA1P55317 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXA1P55317 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXA1P55317 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXA1P55317 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
FOXA1P55317 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 AP002982.1-201ENST00000492365 877 ntBASIC18.16■□□□□ 0.5
FOXA1P55317 C1QBPP2-201ENST00000528754 825 ntBASIC18.16■□□□□ 0.5
FOXA1P55317 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXA1P55317 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
FOXA1P55317 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXA1P55317 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXA1P55317 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA1P55317 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXA1P55317 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
FOXA1P55317 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
FOXA1P55317 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXA1P55317 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXA1P55317 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 KSR1P1-201ENST00000446298 240 ntBASIC18.15■□□□□ 0.5
FOXA1P55317 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.15■□□□□ 0.5
FOXA1P55317 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
FOXA1P55317 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
FOXA1P55317 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms