Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG3P49916 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LIG3P49916 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 SNORA78-201ENST00000459373 127 ntBASIC19.67■□□□□ 0.74
LIG3P49916 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG3P49916 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.67■□□□□ 0.74
LIG3P49916 AP001412.1-201ENST00000608405 714 ntBASIC19.67■□□□□ 0.74
LIG3P49916 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG3P49916 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.67■□□□□ 0.74
LIG3P49916 AL049637.2-201ENST00000641778 930 ntBASIC19.67■□□□□ 0.74
LIG3P49916 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG3P49916 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.67■□□□□ 0.74
LIG3P49916 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG3P49916 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIG3P49916 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIG3P49916 AC009053.2-201ENST00000563701 2365 ntBASIC19.66■□□□□ 0.74
LIG3P49916 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
LIG3P49916 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.66■□□□□ 0.74
LIG3P49916 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.66■□□□□ 0.74
LIG3P49916 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIG3P49916 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.66■□□□□ 0.74
LIG3P49916 YBX1P10-201ENST00000444752 975 ntBASIC19.66■□□□□ 0.74
LIG3P49916 MIR4497-201ENST00000583208 89 ntBASIC19.66■□□□□ 0.74
LIG3P49916 AF186192.3-201ENST00000583427 947 ntBASIC19.66■□□□□ 0.74
LIG3P49916 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.66■□□□□ 0.74
LIG3P49916 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.66■□□□□ 0.74
LIG3P49916 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIG3P49916 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.66■□□□□ 0.74
LIG3P49916 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIG3P49916 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.65■□□□□ 0.74
LIG3P49916 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG3P49916 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.65■□□□□ 0.74
LIG3P49916 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG3P49916 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIG3P49916 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIG3P49916 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
LIG3P49916 AP001271.2-201ENST00000624018 1556 ntBASIC19.65■□□□□ 0.74
LIG3P49916 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LIG3P49916 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.65■□□□□ 0.74
LIG3P49916 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.65■□□□□ 0.74
LIG3P49916 BICD1-207ENST00000551848 1962 ntBASIC19.64■□□□□ 0.74
LIG3P49916 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LIG3P49916 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIG3P49916 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIG3P49916 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.64■□□□□ 0.73
LIG3P49916 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LIG3P49916 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.64■□□□□ 0.73
LIG3P49916 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG3P49916 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms