Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.67■□□□□ 0.9
TPM1P09493 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.67■□□□□ 0.9
TPM1P09493 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.67■□□□□ 0.9
TPM1P09493 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.67■□□□□ 0.9
TPM1P09493 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.67■□□□□ 0.9
TPM1P09493 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.67■□□□□ 0.9
TPM1P09493 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TPM1P09493 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.67■□□□□ 0.9
TPM1P09493 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.67■□□□□ 0.9
TPM1P09493 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TPM1P09493 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TPM1P09493 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.66■□□□□ 0.9
TPM1P09493 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.66■□□□□ 0.9
TPM1P09493 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 AL121832.2-201ENST00000610979 668 ntBASIC20.66■□□□□ 0.9
TPM1P09493 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.66■□□□□ 0.9
TPM1P09493 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.66■□□□□ 0.9
TPM1P09493 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TPM1P09493 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TPM1P09493 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TPM1P09493 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.65■□□□□ 0.9
TPM1P09493 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TPM1P09493 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TPM1P09493 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.65■□□□□ 0.9
TPM1P09493 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
TPM1P09493 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.65■□□□□ 0.9
TPM1P09493 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.65■□□□□ 0.9
TPM1P09493 AC120498.8-201ENST00000614275 531 ntBASIC20.65■□□□□ 0.9
TPM1P09493 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.65■□□□□ 0.9
TPM1P09493 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TPM1P09493 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TPM1P09493 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
TPM1P09493 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 CDCA4P2-201ENST00000441182 718 ntBASIC20.64■□□□□ 0.89
TPM1P09493 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 AC097658.1-201ENST00000475555 843 ntBASIC20.64■□□□□ 0.89
TPM1P09493 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.64■□□□□ 0.89
TPM1P09493 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.64■□□□□ 0.89
TPM1P09493 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
TPM1P09493 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TPM1P09493 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
TPM1P09493 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
TPM1P09493 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TPM1P09493 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TPM1P09493 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
TPM1P09493 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.63■□□□□ 0.89
TPM1P09493 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.63■□□□□ 0.89
TPM1P09493 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TPM1P09493 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms