Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.52■□□□□ 0.4
PDGFAP04085 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.52■□□□□ 0.4
PDGFAP04085 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDGFAP04085 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDGFAP04085 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDGFAP04085 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.52■□□□□ 0.39
PDGFAP04085 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PDGFAP04085 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.52■□□□□ 0.39
PDGFAP04085 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDGFAP04085 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.51■□□□□ 0.39
PDGFAP04085 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.51■□□□□ 0.39
PDGFAP04085 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PDGFAP04085 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 AC246785.2-201ENST00000432512 513 ntBASIC17.51■□□□□ 0.39
PDGFAP04085 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.51■□□□□ 0.39
PDGFAP04085 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PDGFAP04085 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.51■□□□□ 0.39
PDGFAP04085 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PDGFAP04085 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDGFAP04085 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PDGFAP04085 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.5■□□□□ 0.39
PDGFAP04085 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDGFAP04085 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 HBZP1-201ENST00000354915 429 ntBASIC17.5■□□□□ 0.39
PDGFAP04085 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PDGFAP04085 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
PDGFAP04085 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.5■□□□□ 0.39
PDGFAP04085 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 AC020916.1-201ENST00000587762 1774 ntBASIC17.5■□□□□ 0.39
PDGFAP04085 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
PDGFAP04085 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDGFAP04085 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PDGFAP04085 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDGFAP04085 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.49■□□□□ 0.39
PDGFAP04085 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.49■□□□□ 0.39
PDGFAP04085 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.49■□□□□ 0.39
PDGFAP04085 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.49■□□□□ 0.39
PDGFAP04085 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.49■□□□□ 0.39
PDGFAP04085 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 AL691432.2-201ENST00000607222 2038 ntBASIC17.49■□□□□ 0.39
PDGFAP04085 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.49■□□□□ 0.39
PDGFAP04085 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDGFAP04085 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms