Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC3O75056 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC3O75056 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
SDC3O75056 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 AL391807.1-203ENST00000604392 2365 ntBASIC18.32■□□□□ 0.52
SDC3O75056 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 AL512353.2-201ENST00000448759 1962 ntBASIC18.32■□□□□ 0.52
SDC3O75056 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC3O75056 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SDC3O75056 KRT18P23-201ENST00000435622 1283 ntBASIC18.32■□□□□ 0.52
SDC3O75056 AP002383.4-201ENST00000442518 975 ntBASIC18.32■□□□□ 0.52
SDC3O75056 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.32■□□□□ 0.52
SDC3O75056 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.32■□□□□ 0.52
SDC3O75056 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.32■□□□□ 0.52
SDC3O75056 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.32■□□□□ 0.52
SDC3O75056 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDC3O75056 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.32■□□□□ 0.52
SDC3O75056 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SDC3O75056 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.31■□□□□ 0.52
SDC3O75056 MIR3180-1-201ENST00000580374 94 ntBASIC18.31■□□□□ 0.52
SDC3O75056 MIR3180-3-201ENST00000584616 94 ntBASIC18.31■□□□□ 0.52
SDC3O75056 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.31■□□□□ 0.52
SDC3O75056 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.31■□□□□ 0.52
SDC3O75056 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SDC3O75056 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
SDC3O75056 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
SDC3O75056 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
SDC3O75056 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 HLA-F-220ENST00000434407 884 ntBASIC18.3■□□□□ 0.52
SDC3O75056 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.3■□□□□ 0.52
SDC3O75056 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.3■□□□□ 0.52
SDC3O75056 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SDC3O75056 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SDC3O75056 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SDC3O75056 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SDC3O75056 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SDC3O75056 AL109659.2-201ENST00000606809 1674 ntBASIC18.29■□□□□ 0.52
SDC3O75056 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms