Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 MIR1238-201ENST00000408483 83 ntBASIC17.81■□□□□ 0.44
PROM1O43490 AL390955.1-201ENST00000428694 934 ntBASIC17.81■□□□□ 0.44
PROM1O43490 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.81■□□□□ 0.44
PROM1O43490 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.81■□□□□ 0.44
PROM1O43490 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.81■□□□□ 0.44
PROM1O43490 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PROM1O43490 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
PROM1O43490 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.81■□□□□ 0.44
PROM1O43490 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PROM1O43490 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.81■□□□□ 0.44
PROM1O43490 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.81■□□□□ 0.44
PROM1O43490 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.81■□□□□ 0.44
PROM1O43490 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 HEIH-201ENST00000623091 1652 ntBASIC17.8■□□□□ 0.44
PROM1O43490 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
PROM1O43490 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.8■□□□□ 0.44
PROM1O43490 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.8■□□□□ 0.44
PROM1O43490 AC008622.2-201ENST00000617006 1229 ntBASIC17.8■□□□□ 0.44
PROM1O43490 AC068587.9-201ENST00000641814 219 ntBASIC17.8■□□□□ 0.44
PROM1O43490 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 AL031598.1-201ENST00000561511 1773 ntBASIC17.8■□□□□ 0.44
PROM1O43490 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PROM1O43490 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
PROM1O43490 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PROM1O43490 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PROM1O43490 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PROM1O43490 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 AC005082.1-201ENST00000413042 2259 ntBASIC17.79■□□□□ 0.44
PROM1O43490 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.79■□□□□ 0.44
PROM1O43490 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 AC010331.1-201ENST00000611423 582 ntBASIC17.79■□□□□ 0.44
PROM1O43490 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.79■□□□□ 0.44
PROM1O43490 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PROM1O43490 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.79■□□□□ 0.44
PROM1O43490 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
PROM1O43490 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 SLC25A1P2-201ENST00000430693 912 ntBASIC17.78■□□□□ 0.44
PROM1O43490 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.78■□□□□ 0.44
PROM1O43490 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 AL023803.3-201ENST00000615559 522 ntBASIC17.78■□□□□ 0.44
PROM1O43490 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PROM1O43490 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms