Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN3O15551 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN3O15551 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN3O15551 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN3O15551 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CLDN3O15551 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN3O15551 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN3O15551 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN3O15551 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN3O15551 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.48■□□□□ 0.87
CLDN3O15551 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.48■□□□□ 0.87
CLDN3O15551 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.48■□□□□ 0.87
CLDN3O15551 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.48■□□□□ 0.87
CLDN3O15551 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.48■□□□□ 0.87
CLDN3O15551 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN3O15551 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CLDN3O15551 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.47■□□□□ 0.87
CLDN3O15551 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.47■□□□□ 0.87
CLDN3O15551 AC009947.2-201ENST00000444014 672 ntBASIC20.47■□□□□ 0.87
CLDN3O15551 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 AC104076.2-201ENST00000448912 469 ntBASIC20.47■□□□□ 0.87
CLDN3O15551 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 COX11P1-201ENST00000489116 835 ntBASIC20.47■□□□□ 0.87
CLDN3O15551 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 AC068587.9-201ENST00000641814 219 ntBASIC20.47■□□□□ 0.87
CLDN3O15551 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
CLDN3O15551 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLDN3O15551 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN3O15551 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
CLDN3O15551 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLDN3O15551 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 AP000523.1-201ENST00000398242 1049 ntBASIC20.46■□□□□ 0.87
CLDN3O15551 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.46■□□□□ 0.87
CLDN3O15551 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.46■□□□□ 0.87
CLDN3O15551 NEK4P2-201ENST00000580004 1012 ntBASIC20.46■□□□□ 0.87
CLDN3O15551 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.46■□□□□ 0.87
CLDN3O15551 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.46■□□□□ 0.87
CLDN3O15551 AC139887.4-201ENST00000607877 719 ntBASIC20.46■□□□□ 0.87
CLDN3O15551 AC006011.2-201ENST00000621313 1158 ntBASIC20.46■□□□□ 0.87
CLDN3O15551 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 AL031432.5-201ENST00000641059 760 ntBASIC20.46■□□□□ 0.87
CLDN3O15551 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.46■□□□□ 0.87
CLDN3O15551 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN3O15551 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN3O15551 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.45■□□□□ 0.86
CLDN3O15551 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CLDN3O15551 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms