Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SMKR1H3BMG3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 GNAS-203ENST00000306120 1878 ntBASIC13.72□□□□□ -0.21
SMKR1H3BMG3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC13.72□□□□□ -0.21
SMKR1H3BMG3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 AL589743.5-201ENST00000616611 1050 ntBASIC13.71□□□□□ -0.21
SMKR1H3BMG3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.71□□□□□ -0.21
SMKR1H3BMG3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SMKR1H3BMG3 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.71□□□□□ -0.21
SMKR1H3BMG3 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
SMKR1H3BMG3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMKR1H3BMG3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms