Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGA1Q9Y5H4 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
PCDHGA1Q9Y5H4 AL592293.1-201ENST00000502889 1188 ntBASIC24.41■■□□□ 1.5
PCDHGA1Q9Y5H4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHGA1Q9Y5H4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHGA1Q9Y5H4 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.4■■□□□ 1.5
PCDHGA1Q9Y5H4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC24.4■■□□□ 1.5
PCDHGA1Q9Y5H4 AC133552.2-201ENST00000619106 1032 ntBASIC24.4■■□□□ 1.5
PCDHGA1Q9Y5H4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
PCDHGA1Q9Y5H4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.4■■□□□ 1.5
PCDHGA1Q9Y5H4 AC009831.1-201ENST00000580420 1582 ntBASIC24.39■■□□□ 1.5
PCDHGA1Q9Y5H4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGA1Q9Y5H4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHGA1Q9Y5H4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGA1Q9Y5H4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGA1Q9Y5H4 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGA1Q9Y5H4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 DUX4L18-201ENST00000553347 1267 ntBASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 AL035685.1-201ENST00000636663 812 ntBASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGA1Q9Y5H4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
PCDHGA1Q9Y5H4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGA1Q9Y5H4 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC24.35■■□□□ 1.49
PCDHGA1Q9Y5H4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 SMPD5-203ENST00000639008 1464 ntBASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA1Q9Y5H4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
PCDHGA1Q9Y5H4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGA1Q9Y5H4 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA1Q9Y5H4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGA1Q9Y5H4 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGA1Q9Y5H4 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHGA1Q9Y5H4 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHGA1Q9Y5H4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
PCDHGA1Q9Y5H4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHGA1Q9Y5H4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHGA1Q9Y5H4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 AC026202.3-201ENST00000600805 1127 ntBASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 AL451085.2-201ENST00000605085 799 ntBASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHGA1Q9Y5H4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 AC074183.2-201ENST00000623112 922 ntBASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGA1Q9Y5H4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.26■■□□□ 1.47
PCDHGA1Q9Y5H4 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC24.26■■□□□ 1.47
PCDHGA1Q9Y5H4 AP004833.2-201ENST00000532228 1454 ntBASIC24.26■■□□□ 1.47
PCDHGA1Q9Y5H4 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 AC025884.2-201ENST00000553429 711 ntBASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 AL359258.2-201ENST00000564063 1566 ntBASIC24.25■■□□□ 1.47
PCDHGA1Q9Y5H4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHGA1Q9Y5H4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHGA1Q9Y5H4 RP9P-202ENST00000450133 1212 ntBASIC24.23■■□□□ 1.47
PCDHGA1Q9Y5H4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHGA1Q9Y5H4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.22■■□□□ 1.47
PCDHGA1Q9Y5H4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
PCDHGA1Q9Y5H4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
PCDHGA1Q9Y5H4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms