Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LINC00477Q96M19 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LINC00477Q96M19 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.75■□□□□ 0.59
LINC00477Q96M19 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LINC00477Q96M19 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC18.75■□□□□ 0.59
LINC00477Q96M19 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC18.75■□□□□ 0.59
LINC00477Q96M19 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LINC00477Q96M19 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.74■□□□□ 0.59
LINC00477Q96M19 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LINC00477Q96M19 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.74■□□□□ 0.59
LINC00477Q96M19 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LINC00477Q96M19 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LINC00477Q96M19 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LINC00477Q96M19 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LINC00477Q96M19 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.73■□□□□ 0.59
LINC00477Q96M19 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LINC00477Q96M19 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LINC00477Q96M19 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.73■□□□□ 0.59
LINC00477Q96M19 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LINC00477Q96M19 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LINC00477Q96M19 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LINC00477Q96M19 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.72■□□□□ 0.59
LINC00477Q96M19 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.72■□□□□ 0.59
LINC00477Q96M19 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LINC00477Q96M19 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LINC00477Q96M19 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LINC00477Q96M19 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LINC00477Q96M19 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LINC00477Q96M19 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LINC00477Q96M19 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LINC00477Q96M19 PKM-203ENST00000389093 2279 ntTSL 5 BASIC18.7■□□□□ 0.58
LINC00477Q96M19 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LINC00477Q96M19 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LINC00477Q96M19 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
LINC00477Q96M19 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LINC00477Q96M19 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LINC00477Q96M19 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LINC00477Q96M19 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.69■□□□□ 0.58
LINC00477Q96M19 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LINC00477Q96M19 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LINC00477Q96M19 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LINC00477Q96M19 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LINC00477Q96M19 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LINC00477Q96M19 SHF-207ENST00000560540 2062 ntTSL 5 BASIC18.67■□□□□ 0.58
LINC00477Q96M19 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LINC00477Q96M19 AC087741.3-201ENST00000624270 1347 ntBASIC18.67■□□□□ 0.58
LINC00477Q96M19 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LINC00477Q96M19 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LINC00477Q96M19 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC18.66■□□□□ 0.58
LINC00477Q96M19 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.65■□□□□ 0.58
LINC00477Q96M19 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LINC00477Q96M19 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.65■□□□□ 0.58
LINC00477Q96M19 AC044849.2-201ENST00000606596 710 ntBASIC18.65■□□□□ 0.58
LINC00477Q96M19 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC18.65■□□□□ 0.58
LINC00477Q96M19 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LINC00477Q96M19 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LINC00477Q96M19 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LINC00477Q96M19 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC18.64■□□□□ 0.57
LINC00477Q96M19 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LINC00477Q96M19 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LINC00477Q96M19 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LINC00477Q96M19 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.63■□□□□ 0.57
LINC00477Q96M19 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
LINC00477Q96M19 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LINC00477Q96M19 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.63■□□□□ 0.57
LINC00477Q96M19 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LINC00477Q96M19 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LINC00477Q96M19 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.62■□□□□ 0.57
LINC00477Q96M19 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LINC00477Q96M19 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LINC00477Q96M19 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LINC00477Q96M19 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LINC00477Q96M19 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.61■□□□□ 0.57
LINC00477Q96M19 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LINC00477Q96M19 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LINC00477Q96M19 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LINC00477Q96M19 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC18.61■□□□□ 0.57
LINC00477Q96M19 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.61■□□□□ 0.57
LINC00477Q96M19 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LINC00477Q96M19 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LINC00477Q96M19 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LINC00477Q96M19 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LINC00477Q96M19 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LINC00477Q96M19 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LINC00477Q96M19 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.6■□□□□ 0.57
LINC00477Q96M19 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.59■□□□□ 0.57
LINC00477Q96M19 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 AC110285.7-201ENST00000624417 1536 ntBASIC18.59■□□□□ 0.57
LINC00477Q96M19 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC18.59■□□□□ 0.57
LINC00477Q96M19 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LINC00477Q96M19 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.59■□□□□ 0.57
LINC00477Q96M19 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LINC00477Q96M19 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms