Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ALMS1Q8TCU4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ALMS1Q8TCU4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC17.47■□□□□ 0.39
ALMS1Q8TCU4 AC126177.7-201ENST00000547904 679 ntBASIC17.47■□□□□ 0.39
ALMS1Q8TCU4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
ALMS1Q8TCU4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ALMS1Q8TCU4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ALMS1Q8TCU4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
ALMS1Q8TCU4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
ALMS1Q8TCU4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 AC010980.1-201ENST00000587192 1142 ntBASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 AC131212.1-201ENST00000613771 668 ntBASIC17.45■□□□□ 0.38
ALMS1Q8TCU4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 SPCS2P3-201ENST00000500401 656 ntBASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 AC133552.2-201ENST00000619106 1032 ntBASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 AC103834.1-201ENST00000520383 144 ntBASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ALMS1Q8TCU4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 AC025884.2-201ENST00000553429 711 ntBASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 MIR935-201ENST00000401179 91 ntBASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC17.43■□□□□ 0.38
ALMS1Q8TCU4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC17.42■□□□□ 0.38
ALMS1Q8TCU4 AC026202.3-201ENST00000600805 1127 ntBASIC17.42■□□□□ 0.38
ALMS1Q8TCU4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ALMS1Q8TCU4 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC17.42■□□□□ 0.38
ALMS1Q8TCU4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.42■□□□□ 0.38
ALMS1Q8TCU4 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.41■□□□□ 0.38
ALMS1Q8TCU4 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
ALMS1Q8TCU4 HES6-204ENST00000409182 863 ntTSL 2 BASIC17.41■□□□□ 0.38
ALMS1Q8TCU4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 GUSBP5-201ENST00000418136 578 ntBASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 RAP2CP1-202ENST00000605179 643 ntBASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ALMS1Q8TCU4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ALMS1Q8TCU4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ALMS1Q8TCU4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
ALMS1Q8TCU4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.39■□□□□ 0.37
ALMS1Q8TCU4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.38■□□□□ 0.37
ALMS1Q8TCU4 AC139795.1-202ENST00000500444 432 ntBASIC17.38■□□□□ 0.37
ALMS1Q8TCU4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ALMS1Q8TCU4 AL356441.2-201ENST00000443009 864 ntBASIC17.38■□□□□ 0.37
ALMS1Q8TCU4 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ALMS1Q8TCU4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ALMS1Q8TCU4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
ALMS1Q8TCU4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ALMS1Q8TCU4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.35■□□□□ 0.37
ALMS1Q8TCU4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ALMS1Q8TCU4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ALMS1Q8TCU4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 BHLHE23-202ENST00000612929 1109 ntBASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.34■□□□□ 0.37
ALMS1Q8TCU4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.33■□□□□ 0.37
ALMS1Q8TCU4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
ALMS1Q8TCU4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC17.33■□□□□ 0.37
ALMS1Q8TCU4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
ALMS1Q8TCU4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.33■□□□□ 0.36
ALMS1Q8TCU4 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.33■□□□□ 0.36
ALMS1Q8TCU4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC17.33■□□□□ 0.36
ALMS1Q8TCU4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 PVT1_1.1-201ENST00000615125 194 ntBASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ALMS1Q8TCU4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ALMS1Q8TCU4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms