Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.84■■■□□ 2.53
USP48Q86UV5 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
USP48Q86UV5 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
USP48Q86UV5 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.84■■■□□ 2.53
USP48Q86UV5 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USP48Q86UV5 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USP48Q86UV5 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
USP48Q86UV5 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USP48Q86UV5 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.83■■■□□ 2.53
USP48Q86UV5 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
USP48Q86UV5 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
USP48Q86UV5 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
USP48Q86UV5 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.82■■■□□ 2.52
USP48Q86UV5 WHAMMP2-203ENST00000563942 1603 ntBASIC30.81■■■□□ 2.52
USP48Q86UV5 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP48Q86UV5 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC30.81■■■□□ 2.52
USP48Q86UV5 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC30.81■■■□□ 2.52
USP48Q86UV5 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP48Q86UV5 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP48Q86UV5 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
USP48Q86UV5 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.8■■■□□ 2.52
USP48Q86UV5 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
USP48Q86UV5 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC30.8■■■□□ 2.52
USP48Q86UV5 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
USP48Q86UV5 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
USP48Q86UV5 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.79■■■□□ 2.52
USP48Q86UV5 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.79■■■□□ 2.52
USP48Q86UV5 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
USP48Q86UV5 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
USP48Q86UV5 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
USP48Q86UV5 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.78■■■□□ 2.52
USP48Q86UV5 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP48Q86UV5 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
USP48Q86UV5 AC148477.6-201ENST00000623746 465 ntBASIC30.77■■■□□ 2.52
USP48Q86UV5 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
USP48Q86UV5 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC30.76■■■□□ 2.51
USP48Q86UV5 AC135983.2-203ENST00000454486 1613 ntBASIC30.76■■■□□ 2.51
USP48Q86UV5 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
USP48Q86UV5 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
USP48Q86UV5 AL135925.1-201ENST00000605920 1701 ntBASIC30.75■■■□□ 2.51
USP48Q86UV5 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP48Q86UV5 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP48Q86UV5 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP48Q86UV5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
USP48Q86UV5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC30.74■■■□□ 2.51
USP48Q86UV5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
USP48Q86UV5 AC110285.7-201ENST00000624417 1536 ntBASIC30.73■■■□□ 2.51
USP48Q86UV5 AC092296.2-201ENST00000589470 999 ntBASIC30.73■■■□□ 2.51
USP48Q86UV5 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
USP48Q86UV5 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.73■■■□□ 2.51
USP48Q86UV5 AC127502.1-201ENST00000399971 1502 ntBASIC30.73■■■□□ 2.51
USP48Q86UV5 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.72■■■□□ 2.51
USP48Q86UV5 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP48Q86UV5 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.72■■■□□ 2.51
USP48Q86UV5 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
USP48Q86UV5 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP48Q86UV5 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USP48Q86UV5 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP48Q86UV5 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP48Q86UV5 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
USP48Q86UV5 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC30.7■■■□□ 2.51
USP48Q86UV5 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.7■■■□□ 2.51
USP48Q86UV5 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP48Q86UV5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP48Q86UV5 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP48Q86UV5 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP48Q86UV5 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP48Q86UV5 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
USP48Q86UV5 HES4-204ENST00000484667 667 ntTSL 3 BASIC30.67■■■□□ 2.5
USP48Q86UV5 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
USP48Q86UV5 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP48Q86UV5 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP48Q86UV5 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
USP48Q86UV5 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP48Q86UV5 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP48Q86UV5 MIR219A2-201ENST00000608502 1504 ntBASIC30.66■■■□□ 2.5
USP48Q86UV5 ECEL1P2-201ENST00000461596 1295 ntBASIC30.65■■■□□ 2.5
USP48Q86UV5 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC30.65■■■□□ 2.5
USP48Q86UV5 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC30.64■■■□□ 2.5
USP48Q86UV5 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP48Q86UV5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.64■■■□□ 2.5
USP48Q86UV5 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP48Q86UV5 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.62■■■□□ 2.49
USP48Q86UV5 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP48Q86UV5 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP48Q86UV5 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
USP48Q86UV5 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.61■■■□□ 2.49
USP48Q86UV5 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP48Q86UV5 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms