Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.34■■■□□ 2.13
NKX3-2P78367 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
NKX3-2P78367 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.33■■■□□ 2.13
NKX3-2P78367 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
NKX3-2P78367 AC007029.1-201ENST00000604183 313 ntBASIC28.33■■■□□ 2.13
NKX3-2P78367 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NKX3-2P78367 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NKX3-2P78367 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NKX3-2P78367 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.32■■■□□ 2.12
NKX3-2P78367 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
NKX3-2P78367 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.31■■■□□ 2.12
NKX3-2P78367 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NKX3-2P78367 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NKX3-2P78367 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
NKX3-2P78367 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
NKX3-2P78367 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.3■■■□□ 2.12
NKX3-2P78367 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NKX3-2P78367 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.3■■■□□ 2.12
NKX3-2P78367 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.3■■■□□ 2.12
NKX3-2P78367 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NKX3-2P78367 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
NKX3-2P78367 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
NKX3-2P78367 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.29■■■□□ 2.12
NKX3-2P78367 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.29■■■□□ 2.12
NKX3-2P78367 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
NKX3-2P78367 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
NKX3-2P78367 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.26■■■□□ 2.11
NKX3-2P78367 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NKX3-2P78367 AC129492.7-201ENST00000622992 756 ntBASIC28.26■■■□□ 2.11
NKX3-2P78367 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NKX3-2P78367 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
NKX3-2P78367 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX3-2P78367 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
NKX3-2P78367 ST7-AS1-201ENST00000456775 1889 ntBASIC28.23■■■□□ 2.11
NKX3-2P78367 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.23■■■□□ 2.11
NKX3-2P78367 RARRES2P1-201ENST00000474487 481 ntBASIC28.23■■■□□ 2.11
NKX3-2P78367 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.23■■■□□ 2.11
NKX3-2P78367 AC009831.1-201ENST00000580420 1582 ntBASIC28.23■■■□□ 2.11
NKX3-2P78367 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NKX3-2P78367 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NKX3-2P78367 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NKX3-2P78367 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NKX3-2P78367 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
NKX3-2P78367 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NKX3-2P78367 AL592293.1-201ENST00000502889 1188 ntBASIC28.2■■■□□ 2.1
NKX3-2P78367 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.2■■■□□ 2.1
NKX3-2P78367 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.19■■■□□ 2.1
NKX3-2P78367 AC025884.2-201ENST00000553429 711 ntBASIC28.19■■■□□ 2.1
NKX3-2P78367 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.19■■■□□ 2.1
NKX3-2P78367 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NKX3-2P78367 SMPD5-203ENST00000639008 1464 ntBASIC28.19■■■□□ 2.1
NKX3-2P78367 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.19■■■□□ 2.1
NKX3-2P78367 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NKX3-2P78367 AC133552.2-201ENST00000619106 1032 ntBASIC28.18■■■□□ 2.1
NKX3-2P78367 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.17■■■□□ 2.1
NKX3-2P78367 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NKX3-2P78367 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NKX3-2P78367 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.16■■■□□ 2.1
NKX3-2P78367 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NKX3-2P78367 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.16■■■□□ 2.1
NKX3-2P78367 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
NKX3-2P78367 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NKX3-2P78367 AC026202.3-201ENST00000600805 1127 ntBASIC28.15■■■□□ 2.1
NKX3-2P78367 AC100797.4-201ENST00000631653 1827 ntBASIC28.15■■■□□ 2.1
NKX3-2P78367 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NKX3-2P78367 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.14■■■□□ 2.1
NKX3-2P78367 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.14■■■□□ 2.1
NKX3-2P78367 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.14■■■□□ 2.1
NKX3-2P78367 AL359258.2-201ENST00000564063 1566 ntBASIC28.13■■■□□ 2.09
NKX3-2P78367 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
NKX3-2P78367 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NKX3-2P78367 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
NKX3-2P78367 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.12■■■□□ 2.09
NKX3-2P78367 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NKX3-2P78367 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.12■■■□□ 2.09
NKX3-2P78367 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NKX3-2P78367 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.1■■■□□ 2.09
NKX3-2P78367 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.1■■■□□ 2.09
NKX3-2P78367 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.1■■■□□ 2.09
NKX3-2P78367 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
NKX3-2P78367 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NKX3-2P78367 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NKX3-2P78367 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
NKX3-2P78367 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NKX3-2P78367 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NKX3-2P78367 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.08■■■□□ 2.09
NKX3-2P78367 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.08■■■□□ 2.09
NKX3-2P78367 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
NKX3-2P78367 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.07■■■□□ 2.08
NKX3-2P78367 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms