Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC29.69■■■□□ 2.34
CTCFP49711 AC139795.1-202ENST00000500444 432 ntBASIC29.69■■■□□ 2.34
CTCFP49711 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC29.69■■■□□ 2.34
CTCFP49711 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
CTCFP49711 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CTCFP49711 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
CTCFP49711 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
CTCFP49711 AL157400.5-201ENST00000507624 621 ntBASIC29.68■■■□□ 2.34
CTCFP49711 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
CTCFP49711 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
CTCFP49711 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC29.67■■■□□ 2.34
CTCFP49711 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CTCFP49711 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC29.65■■■□□ 2.34
CTCFP49711 SPCS2P3-201ENST00000500401 656 ntBASIC29.65■■■□□ 2.34
CTCFP49711 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CTCFP49711 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CTCFP49711 PRTG-204ENST00000561292 833 ntTSL 3 BASIC29.64■■■□□ 2.34
CTCFP49711 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
CTCFP49711 AC110285.7-201ENST00000624417 1536 ntBASIC29.63■■■□□ 2.33
CTCFP49711 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CTCFP49711 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CTCFP49711 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
CTCFP49711 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CTCFP49711 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC29.61■■■□□ 2.33
CTCFP49711 AC092666.2-201ENST00000613287 246 ntBASIC29.61■■■□□ 2.33
CTCFP49711 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC29.6■■■□□ 2.33
CTCFP49711 MIR4508-201ENST00000584178 70 ntBASIC29.6■■■□□ 2.33
CTCFP49711 AC026202.3-201ENST00000600805 1127 ntBASIC29.6■■■□□ 2.33
CTCFP49711 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC29.59■■■□□ 2.33
CTCFP49711 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC29.59■■■□□ 2.33
CTCFP49711 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CTCFP49711 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CTCFP49711 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
CTCFP49711 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CTCFP49711 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
CTCFP49711 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
CTCFP49711 PVT1_1.1-201ENST00000615125 194 ntBASIC29.58■■■□□ 2.33
CTCFP49711 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
CTCFP49711 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
CTCFP49711 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
CTCFP49711 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CTCFP49711 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC29.57■■■□□ 2.32
CTCFP49711 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CTCFP49711 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC29.56■■■□□ 2.32
CTCFP49711 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CTCFP49711 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
CTCFP49711 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
CTCFP49711 AL031848.2-201ENST00000607670 837 ntBASIC29.56■■■□□ 2.32
CTCFP49711 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
CTCFP49711 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CTCFP49711 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC29.55■■■□□ 2.32
CTCFP49711 MED25-210ENST00000612854 801 ntTSL 5 BASIC29.55■■■□□ 2.32
CTCFP49711 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CTCFP49711 MED25-214ENST00000622402 642 ntTSL 5 BASIC29.55■■■□□ 2.32
CTCFP49711 HYI-210ENST00000486909 905 ntTSL 5 BASIC29.54■■■□□ 2.32
CTCFP49711 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
CTCFP49711 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CTCFP49711 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CTCFP49711 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC29.53■■■□□ 2.32
CTCFP49711 MIR6765-201ENST00000614092 87 ntBASIC29.53■■■□□ 2.32
CTCFP49711 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CTCFP49711 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CTCFP49711 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CTCFP49711 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.52■■■□□ 2.32
CTCFP49711 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.32
CTCFP49711 AC239859.2-201ENST00000444165 318 ntBASIC29.51■■■□□ 2.31
CTCFP49711 AL139246.5-201ENST00000606645 996 ntBASIC29.51■■■□□ 2.31
CTCFP49711 RALB-208ENST00000631312 311 ntTSL 5 BASIC29.51■■■□□ 2.31
CTCFP49711 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
CTCFP49711 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
CTCFP49711 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
CTCFP49711 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CTCFP49711 AC103724.3-201ENST00000564481 992 ntBASIC29.49■■■□□ 2.31
CTCFP49711 WHAMMP2-203ENST00000563942 1603 ntBASIC29.49■■■□□ 2.31
CTCFP49711 SMPD5-203ENST00000639008 1464 ntBASIC29.48■■■□□ 2.31
CTCFP49711 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
CTCFP49711 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC29.47■■■□□ 2.31
CTCFP49711 RNF146-205ENST00000477776 762 ntTSL 3 BASIC29.46■■■□□ 2.31
CTCFP49711 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC29.45■■■□□ 2.31
CTCFP49711 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC29.45■■■□□ 2.31
CTCFP49711 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.45■■■□□ 2.3
CTCFP49711 AC135983.2-203ENST00000454486 1613 ntBASIC29.45■■■□□ 2.3
CTCFP49711 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC29.44■■■□□ 2.3
CTCFP49711 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.44■■■□□ 2.3
CTCFP49711 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC29.44■■■□□ 2.3
CTCFP49711 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CTCFP49711 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC29.44■■■□□ 2.3
CTCFP49711 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CTCFP49711 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
CTCFP49711 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
CTCFP49711 NALT1-201ENST00000429224 738 ntTSL 5 BASIC29.41■■■□□ 2.3
CTCFP49711 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC29.41■■■□□ 2.3
CTCFP49711 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC29.41■■■□□ 2.3
CTCFP49711 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC29.41■■■□□ 2.3
CTCFP49711 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
CTCFP49711 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CTCFP49711 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CTCFP49711 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CTCFP49711 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC29.4■■■□□ 2.3
CTCFP49711 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms