Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CKS2P33552 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CKS2P33552 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CKS2P33552 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CKS2P33552 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CKS2P33552 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CKS2P33552 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CKS2P33552 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CKS2P33552 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.34■□□□□ 0.53
CKS2P33552 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.34■□□□□ 0.53
CKS2P33552 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS2P33552 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.33■□□□□ 0.53
CKS2P33552 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CKS2P33552 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CKS2P33552 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CKS2P33552 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CKS2P33552 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CKS2P33552 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.33■□□□□ 0.52
CKS2P33552 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CKS2P33552 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CKS2P33552 AC100797.4-201ENST00000631653 1827 ntBASIC18.33■□□□□ 0.52
CKS2P33552 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.32■□□□□ 0.52
CKS2P33552 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CKS2P33552 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CKS2P33552 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CKS2P33552 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CKS2P33552 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CKS2P33552 AC127502.1-201ENST00000399971 1502 ntBASIC18.3■□□□□ 0.52
CKS2P33552 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CKS2P33552 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CKS2P33552 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CKS2P33552 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CKS2P33552 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CKS2P33552 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CKS2P33552 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.28■□□□□ 0.52
CKS2P33552 AC093323.1-202ENST00000635031 2045 ntBASIC18.28■□□□□ 0.52
CKS2P33552 AP002414.2-202ENST00000590929 1450 ntBASIC18.28■□□□□ 0.52
CKS2P33552 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS2P33552 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CKS2P33552 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.28■□□□□ 0.52
CKS2P33552 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS2P33552 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS2P33552 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS2P33552 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS2P33552 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CKS2P33552 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CKS2P33552 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CKS2P33552 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CKS2P33552 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CKS2P33552 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS2P33552 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.26■□□□□ 0.51
CKS2P33552 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS2P33552 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS2P33552 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS2P33552 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CKS2P33552 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CKS2P33552 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CKS2P33552 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CKS2P33552 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.24■□□□□ 0.51
CKS2P33552 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS2P33552 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS2P33552 AL133380.1-201ENST00000506013 324 ntBASIC18.24■□□□□ 0.51
CKS2P33552 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC18.24■□□□□ 0.51
CKS2P33552 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CKS2P33552 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.24■□□□□ 0.51
CKS2P33552 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS2P33552 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.23■□□□□ 0.51
CKS2P33552 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.23■□□□□ 0.51
CKS2P33552 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
CKS2P33552 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS2P33552 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CKS2P33552 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CKS2P33552 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CKS2P33552 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CKS2P33552 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CKS2P33552 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CKS2P33552 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CKS2P33552 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS2P33552 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS2P33552 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS2P33552 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.21■□□□□ 0.51
CKS2P33552 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CKS2P33552 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS2P33552 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms