Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CACNA1FO60840 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
CACNA1FO60840 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
CACNA1FO60840 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CACNA1FO60840 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CACNA1FO60840 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CACNA1FO60840 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CACNA1FO60840 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CACNA1FO60840 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CACNA1FO60840 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CACNA1FO60840 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32.18■■■□□ 2.74
CACNA1FO60840 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.18■■■□□ 2.74
CACNA1FO60840 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
CACNA1FO60840 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CACNA1FO60840 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC32.18■■■□□ 2.74
CACNA1FO60840 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.17■■■□□ 2.74
CACNA1FO60840 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CACNA1FO60840 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.16■■■□□ 2.74
CACNA1FO60840 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC32.16■■■□□ 2.74
CACNA1FO60840 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
CACNA1FO60840 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CACNA1FO60840 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
CACNA1FO60840 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CACNA1FO60840 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
CACNA1FO60840 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.13■■■□□ 2.73
CACNA1FO60840 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CACNA1FO60840 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.12■■■□□ 2.73
CACNA1FO60840 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC32.12■■■□□ 2.73
CACNA1FO60840 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC32.12■■■□□ 2.73
CACNA1FO60840 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CACNA1FO60840 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
CACNA1FO60840 AC060814.1-201ENST00000554326 538 ntBASIC32.11■■■□□ 2.73
CACNA1FO60840 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
CACNA1FO60840 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
CACNA1FO60840 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CACNA1FO60840 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
CACNA1FO60840 LINC01003-201ENST00000564834 1764 ntBASIC32.09■■■□□ 2.73
CACNA1FO60840 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.08■■■□□ 2.73
CACNA1FO60840 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CACNA1FO60840 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
CACNA1FO60840 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
CACNA1FO60840 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CACNA1FO60840 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
CACNA1FO60840 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC32.06■■■□□ 2.72
CACNA1FO60840 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC32.06■■■□□ 2.72
CACNA1FO60840 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.06■■■□□ 2.72
CACNA1FO60840 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CACNA1FO60840 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CACNA1FO60840 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.05■■■□□ 2.72
CACNA1FO60840 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CACNA1FO60840 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
CACNA1FO60840 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
CACNA1FO60840 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
CACNA1FO60840 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
CACNA1FO60840 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
CACNA1FO60840 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CACNA1FO60840 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
CACNA1FO60840 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CACNA1FO60840 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CACNA1FO60840 AC092296.2-201ENST00000589470 999 ntBASIC32.02■■■□□ 2.72
CACNA1FO60840 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC32.01■■■□□ 2.72
CACNA1FO60840 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC32.01■■■□□ 2.72
CACNA1FO60840 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
CACNA1FO60840 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.01■■■□□ 2.71
CACNA1FO60840 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CACNA1FO60840 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
CACNA1FO60840 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CACNA1FO60840 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CACNA1FO60840 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32■■■□□ 2.71
CACNA1FO60840 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32■■■□□ 2.71
CACNA1FO60840 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CACNA1FO60840 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CACNA1FO60840 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.99■■■□□ 2.71
CACNA1FO60840 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CACNA1FO60840 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.99■■■□□ 2.71
CACNA1FO60840 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
CACNA1FO60840 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CACNA1FO60840 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CACNA1FO60840 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
CACNA1FO60840 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
CACNA1FO60840 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.98■■■□□ 2.71
CACNA1FO60840 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CACNA1FO60840 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CACNA1FO60840 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.97■■■□□ 2.71
CACNA1FO60840 HSD17B1P1-201ENST00000590052 955 ntBASIC31.97■■■□□ 2.71
CACNA1FO60840 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
CACNA1FO60840 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.96■■■□□ 2.71
CACNA1FO60840 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CACNA1FO60840 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
CACNA1FO60840 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms