Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
MSH4O15457 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
MSH4O15457 AC148477.6-201ENST00000623746 465 ntBASIC28.55■■■□□ 2.16
MSH4O15457 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
MSH4O15457 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
MSH4O15457 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.54■■■□□ 2.16
MSH4O15457 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.54■■■□□ 2.16
MSH4O15457 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
MSH4O15457 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.54■■■□□ 2.16
MSH4O15457 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
MSH4O15457 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.52■■■□□ 2.16
MSH4O15457 MIR219A2-201ENST00000608502 1504 ntBASIC28.5■■■□□ 2.15
MSH4O15457 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
MSH4O15457 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH4O15457 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.5■■■□□ 2.15
MSH4O15457 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.5■■■□□ 2.15
MSH4O15457 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH4O15457 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
MSH4O15457 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH4O15457 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
MSH4O15457 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
MSH4O15457 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.48■■■□□ 2.15
MSH4O15457 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
MSH4O15457 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH4O15457 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH4O15457 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH4O15457 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.45■■■□□ 2.15
MSH4O15457 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.45■■■□□ 2.15
MSH4O15457 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.45■■■□□ 2.14
MSH4O15457 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
MSH4O15457 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
MSH4O15457 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH4O15457 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
MSH4O15457 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
MSH4O15457 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.44■■■□□ 2.14
MSH4O15457 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.44■■■□□ 2.14
MSH4O15457 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH4O15457 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
MSH4O15457 AC018358.1-201ENST00000631079 1402 ntBASIC28.43■■■□□ 2.14
MSH4O15457 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.43■■■□□ 2.14
MSH4O15457 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
MSH4O15457 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.42■■■□□ 2.14
MSH4O15457 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
MSH4O15457 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
MSH4O15457 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
MSH4O15457 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
MSH4O15457 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
MSH4O15457 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
MSH4O15457 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
MSH4O15457 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH4O15457 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
MSH4O15457 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH4O15457 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
MSH4O15457 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
MSH4O15457 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
MSH4O15457 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
MSH4O15457 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
MSH4O15457 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH4O15457 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.38■■■□□ 2.13
MSH4O15457 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.38■■■□□ 2.13
MSH4O15457 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH4O15457 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
MSH4O15457 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH4O15457 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH4O15457 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.37■■■□□ 2.13
MSH4O15457 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.37■■■□□ 2.13
MSH4O15457 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH4O15457 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH4O15457 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH4O15457 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
MSH4O15457 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
MSH4O15457 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
MSH4O15457 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.35■■■□□ 2.13
MSH4O15457 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
MSH4O15457 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.34■■■□□ 2.13
MSH4O15457 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
MSH4O15457 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.34■■■□□ 2.13
MSH4O15457 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.33■■■□□ 2.13
MSH4O15457 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH4O15457 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.33■■■□□ 2.13
MSH4O15457 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH4O15457 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH4O15457 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
MSH4O15457 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
MSH4O15457 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH4O15457 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
MSH4O15457 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.32■■■□□ 2.12
MSH4O15457 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms