RNA–Protein interactions for RNA: ENST00000635251.1

PSPC1-207, Transcript of paraspeckle component 1, humanhuman

TSL 2

Gene PSPC1, Length 2,285 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-207ENST00000635251 NISCHQ9Y2I1 1504 aa21.98■■□□□ 1.11
PSPC1-207ENST00000635251 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
PSPC1-207ENST00000635251 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
PSPC1-207ENST00000635251 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
PSPC1-207ENST00000635251 SUPT5HO00267 1087 aaKnown RBP18.51■□□□□ 0.55
PSPC1-207ENST00000635251 DCAF8L2P0C7V8 631 aa18.3■□□□□ 0.52
PSPC1-207ENST00000635251 DCAF1Q9Y4B6 1507 aa18.02■□□□□ 0.48
PSPC1-207ENST00000635251 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
PSPC1-207ENST00000635251 MYO15BQ96JP2 1530 aa17.9■□□□□ 0.46
PSPC1-207ENST00000635251 ABCC9O60706 1549 aa17.57■□□□□ 0.4
PSPC1-207ENST00000635251 HRCP23327 699 aa17.54■□□□□ 0.4
PSPC1-207ENST00000635251 SCRIBQ14160 1630 aa17.53■□□□□ 0.4
PSPC1-207ENST00000635251 PCGF6Q9BYE7 350 aa17.52■□□□□ 0.4
PSPC1-207ENST00000635251 LOC105371045A0A1W2PR82 267 aa17.46■□□□□ 0.39
PSPC1-207ENST00000635251 RSF1Q96T23 1441 aaPredicted RBP17.42■□□□□ 0.38
PSPC1-207ENST00000635251 NACADO15069 1562 aa17.25■□□□□ 0.35
PSPC1-207ENST00000635251 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
PSPC1-207ENST00000635251 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
PSPC1-207ENST00000635251 TRIM26Q12899 539 aaPredicted RBP17.18■□□□□ 0.34
PSPC1-207ENST00000635251 PPARGC1BQ86YN6 1023 aaKnown RBP17.16■□□□□ 0.34
PSPC1-207ENST00000635251 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
PSPC1-207ENST00000635251 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
PSPC1-207ENST00000635251 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
PSPC1-207ENST00000635251 WIZO95785 1651 aa17.01■□□□□ 0.31
PSPC1-207ENST00000635251 EHMT2Q96KQ7 1210 aa16.98■□□□□ 0.31
PSPC1-207ENST00000635251 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
PSPC1-207ENST00000635251 ZEB1P37275 1124 aaPredicted RBP16.86■□□□□ 0.29
PSPC1-207ENST00000635251 EIF4G1Q04637 1599 aaKnown RBP16.76■□□□□ 0.27
PSPC1-207ENST00000635251 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
PSPC1-207ENST00000635251 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
PSPC1-207ENST00000635251 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
PSPC1-207ENST00000635251 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
PSPC1-207ENST00000635251 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
PSPC1-207ENST00000635251 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
PSPC1-207ENST00000635251 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
PSPC1-207ENST00000635251 SOGA1O94964 1423 aa16.51■□□□□ 0.23
PSPC1-207ENST00000635251 CEP162Q5TB80 1403 aa16.48■□□□□ 0.23
PSPC1-207ENST00000635251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.48■□□□□ 0.23
PSPC1-207ENST00000635251 CCER1Q8TC90 406 aaPredicted RBP16.48■□□□□ 0.23
PSPC1-207ENST00000635251 EEA1Q15075 1411 aa16.47■□□□□ 0.23
PSPC1-207ENST00000635251 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.23
PSPC1-207ENST00000635251 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
PSPC1-207ENST00000635251 TTBK1Q5TCY1 1321 aaPredicted RBP16.45■□□□□ 0.22
PSPC1-207ENST00000635251 TNIKQ9UKE5 1360 aa16.45■□□□□ 0.22
PSPC1-207ENST00000635251 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
PSPC1-207ENST00000635251 UBTFP17480 764 aaKnown RBP16.44■□□□□ 0.22
PSPC1-207ENST00000635251 RUSC2Q8N2Y8 1516 aa16.41■□□□□ 0.22
PSPC1-207ENST00000635251 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
PSPC1-207ENST00000635251 GOLGA3Q08378 1498 aa16.36■□□□□ 0.21
PSPC1-207ENST00000635251 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
PSPC1-207ENST00000635251 BAZ1BQ9UIG0 1483 aaKnown RBP16.28■□□□□ 0.2
PSPC1-207ENST00000635251 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
PSPC1-207ENST00000635251 CEP164Q9UPV0 1460 aa16.26■□□□□ 0.19
PSPC1-207ENST00000635251 KIF21BO75037 1637 aa16.22■□□□□ 0.19
PSPC1-207ENST00000635251 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
PSPC1-207ENST00000635251 CLIP1P30622 1438 aa16.18■□□□□ 0.18
PSPC1-207ENST00000635251 DIEXFQ68CQ4 756 aaKnown RBP16.16■□□□□ 0.18
PSPC1-207ENST00000635251 APLP2Q06481 763 aa16.12■□□□□ 0.17
PSPC1-207ENST00000635251 RAPGEF2Q9Y4G8 1499 aa16.11■□□□□ 0.17
PSPC1-207ENST00000635251 RANGAP1P46060 587 aaPredicted RBP16.11■□□□□ 0.17
PSPC1-207ENST00000635251 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
PSPC1-207ENST00000635251 HNRNPUL2Q1KMD3 747 aaKnown RBP16.1■□□□□ 0.17
PSPC1-207ENST00000635251 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
PSPC1-207ENST00000635251 ACIN1Q9UKV3 1341 aaKnown RBP16.05■□□□□ 0.16
PSPC1-207ENST00000635251 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
PSPC1-207ENST00000635251 BIVM-ERCC5R4GMW8 1640 aa16.02■□□□□ 0.15
PSPC1-207ENST00000635251 CENPBP07199 599 aaPredicted RBP16.01■□□□□ 0.15
PSPC1-207ENST00000635251 NEUROD1Q13562 356 aa16■□□□□ 0.15
PSPC1-207ENST00000635251 PELP1Q8IZL8 1130 aaKnown RBP15.97■□□□□ 0.15
PSPC1-207ENST00000635251 HMGXB3Q12766 1538 aa15.96■□□□□ 0.15
PSPC1-207ENST00000635251 NCAPD3P42695 1498 aa15.95■□□□□ 0.14
PSPC1-207ENST00000635251 ERICH3Q5RHP9 1530 aa15.95■□□□□ 0.14
PSPC1-207ENST00000635251 PRXQ9BXM0 1461 aa15.93■□□□□ 0.14
PSPC1-207ENST00000635251 CUX1P39880 1505 aa15.91■□□□□ 0.14
PSPC1-207ENST00000635251 KIF27Q86VH2 1401 aa15.89■□□□□ 0.13
PSPC1-207ENST00000635251 ARAP1Q96P48 1450 aa15.88■□□□□ 0.13
PSPC1-207ENST00000635251 GTF3C3Q9Y5Q9 886 aa15.87■□□□□ 0.13
PSPC1-207ENST00000635251 CFTRP13569 1480 aa15.85■□□□□ 0.13
PSPC1-207ENST00000635251 KANK4Q5T7N3 995 aaPredicted RBP15.82■□□□□ 0.12
PSPC1-207ENST00000635251 YTHDC1Q96MU7 727 aaKnown RBP15.81■□□□□ 0.12
PSPC1-207ENST00000635251 MIER1Q8N108 512 aa15.78■□□□□ 0.12
PSPC1-207ENST00000635251 CLSPNQ9HAW4 1339 aa15.76■□□□□ 0.11
PSPC1-207ENST00000635251 DHX57Q6P158 1386 aaKnown RBP15.75■□□□□ 0.11
PSPC1-207ENST00000635251 ARHGAP35Q9NRY4 1499 aa15.73■□□□□ 0.11
PSPC1-207ENST00000635251 CUX2O14529 1486 aa15.73■□□□□ 0.11
PSPC1-207ENST00000635251 RRBP1Q9P2E9 1410 aaKnown RBP15.72■□□□□ 0.11
PSPC1-207ENST00000635251 PRDM2Q13029 1718 aa15.72■□□□□ 0.11
PSPC1-207ENST00000635251 IGF1RP08069 1367 aa15.68■□□□□ 0.1
PSPC1-207ENST00000635251 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
PSPC1-207ENST00000635251 CADPSQ9ULU8 1353 aa15.68■□□□□ 0.1
PSPC1-207ENST00000635251 ITGAEP38570 1179 aa15.67■□□□□ 0.1
PSPC1-207ENST00000635251 CARMIL1Q5VZK9 1371 aa15.64■□□□□ 0.09
PSPC1-207ENST00000635251 FGD5Q6ZNL6 1462 aa15.64■□□□□ 0.09
PSPC1-207ENST00000635251 TIAM1Q13009 1591 aa15.59■□□□□ 0.09
PSPC1-207ENST00000635251 MAP3K1Q13233 1512 aa15.56■□□□□ 0.08
PSPC1-207ENST00000635251 RAB3GAP2Q9H2M9 1393 aa15.54■□□□□ 0.08
PSPC1-207ENST00000635251 FANCD2Q9BXW9 1451 aa15.54■□□□□ 0.08
PSPC1-207ENST00000635251 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
PSPC1-207ENST00000635251 LRRC9Q6ZRR7 1453 aa15.53■□□□□ 0.08
PSPC1-207ENST00000635251 FHAD1B1AJZ9 1412 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms