RNA–Protein interactions for RNA: ENST00000627685.2

TCF4-260, Transcript of transcription factor 4, humanhuman

TSL 5

Gene TCF4, Length 882 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-260ENST00000627685 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
TCF4-260ENST00000627685 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
TCF4-260ENST00000627685 SENP3Q9H4L4 574 aaPredicted RBP21.31■■□□□ 1
TCF4-260ENST00000627685 PHF23Q9BUL5 403 aaPredicted RBP21.29■■□□□ 1
TCF4-260ENST00000627685 FOXD1Q16676 465 aa19.81■□□□□ 0.76
TCF4-260ENST00000627685 PLPPR3Q6T4P5 718 aa19.59■□□□□ 0.73
TCF4-260ENST00000627685 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
TCF4-260ENST00000627685 ADRA2BP18089 450 aa18.88■□□□□ 0.61
TCF4-260ENST00000627685 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
TCF4-260ENST00000627685 PIAS4Q8N2W9 510 aaPredicted RBP18.65■□□□□ 0.58
TCF4-260ENST00000627685 MSH5O43196 834 aa18.35■□□□□ 0.53
TCF4-260ENST00000627685 SCAF1Q9H7N4 1312 aaKnown RBP17.26■□□□□ 0.35
TCF4-260ENST00000627685 PPP4R3CPQ6ZMV5 832 aa17.24■□□□□ 0.35
TCF4-260ENST00000627685 MAPK8IP2Q13387 824 aaPredicted RBP17.21■□□□□ 0.35
TCF4-260ENST00000627685 CCDC180Q9P1Z9 1646 aa17.16■□□□□ 0.34
TCF4-260ENST00000627685 POTEDQ86YR6 584 aa17.15■□□□□ 0.34
TCF4-260ENST00000627685 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
TCF4-260ENST00000627685 ABCC9O60706 1549 aa16.8■□□□□ 0.28
TCF4-260ENST00000627685 CNKSR2Q8WXI2 1034 aa16.8■□□□□ 0.28
TCF4-260ENST00000627685 NCBP3Q53F19 620 aaKnown RBP16.72■□□□□ 0.27
TCF4-260ENST00000627685 KCNA4P22459 653 aa16.57■□□□□ 0.24
TCF4-260ENST00000627685 RNF216Q9NWF9 866 aaPredicted RBP16.52■□□□□ 0.24
TCF4-260ENST00000627685 HOXD11P31277 338 aaPredicted RBP16.5■□□□□ 0.23
TCF4-260ENST00000627685 NPM3O75607 178 aaKnown RBP16.46■□□□□ 0.23
TCF4-260ENST00000627685 DCAF8L1A6NGE4 600 aa16.34■□□□□ 0.21
TCF4-260ENST00000627685 NACADO15069 1562 aa16.1■□□□□ 0.17
TCF4-260ENST00000627685 RB1CC1Q8TDY2 1594 aa16.1■□□□□ 0.17
TCF4-260ENST00000627685 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.16
TCF4-260ENST00000627685 MYO15BQ96JP2 1530 aa16.06■□□□□ 0.16
TCF4-260ENST00000627685 DCAF1Q9Y4B6 1507 aa15.95■□□□□ 0.14
TCF4-260ENST00000627685 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
TCF4-260ENST00000627685 UNC13AQ9UPW8 1703 aa15.85■□□□□ 0.13
TCF4-260ENST00000627685 BICRAQ9NZM4 1560 aa15.82■□□□□ 0.12
TCF4-260ENST00000627685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.8■□□□□ 0.12
TCF4-260ENST00000627685 SLC4A1APQ9BWU0 796 aaKnown RBP15.74■□□□□ 0.11
TCF4-260ENST00000627685 DCAF8L2P0C7V8 631 aa15.73■□□□□ 0.11
TCF4-260ENST00000627685 RNF39Q9H2S5 420 aa15.7■□□□□ 0.1
TCF4-260ENST00000627685 PABPN1Q86U42 306 aaKnown RBP eCLIP15.61■□□□□ 0.09
TCF4-260ENST00000627685 SLC4A2P04920 1241 aa15.6■□□□□ 0.09
TCF4-260ENST00000627685 SCRIBQ14160 1630 aa15.6■□□□□ 0.09
TCF4-260ENST00000627685 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
TCF4-260ENST00000627685 CACNB1Q02641 598 aaPredicted RBP15.53■□□□□ 0.08
TCF4-260ENST00000627685 C1QBPQ07021 282 aaKnown RBP15.5■□□□□ 0.07
TCF4-260ENST00000627685 U3KPZ7 1027 aaPredicted RBP15.47■□□□□ 0.07
TCF4-260ENST00000627685 EIF4G1Q04637 1599 aaKnown RBP15.3■□□□□ 0.04
TCF4-260ENST00000627685 FOXD4L1Q9NU39 408 aa15.3■□□□□ 0.04
TCF4-260ENST00000627685 CC2D2AQ9P2K1 1620 aa15.24■□□□□ 0.03
TCF4-260ENST00000627685 ZBTB22O15209 634 aa15.22■□□□□ 0.03
TCF4-260ENST00000627685 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
TCF4-260ENST00000627685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.19■□□□□ 0.02
TCF4-260ENST00000627685 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
TCF4-260ENST00000627685 SPINK5Q9NQ38 1064 aaPredicted RBP15.14■□□□□ 0.01
TCF4-260ENST00000627685 SAMD1Q6SPF0 538 aaPredicted RBP15.13■□□□□ 0.01
TCF4-260ENST00000627685 CAPN15O75808 1086 aa15.11■□□□□ 0.01
TCF4-260ENST00000627685 CECR2Q9BXF3 1484 aa15.1■□□□□ 0.01
TCF4-260ENST00000627685 APLP2Q06481 763 aa15.1■□□□□ 0.01
TCF4-260ENST00000627685 EHMT2Q96KQ7 1210 aa15.05■□□□□ -0
TCF4-260ENST00000627685 TRHP20396 242 aaPredicted RBP14.99□□□□□ -0.01
TCF4-260ENST00000627685 SMARCA4P51532 1647 aa14.96□□□□□ -0.01
TCF4-260ENST00000627685 CSRNP3Q8WYN3 585 aa14.94□□□□□ -0.02
TCF4-260ENST00000627685 ZNF219Q9P2Y4 722 aaPredicted RBP14.92□□□□□ -0.02
TCF4-260ENST00000627685 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
TCF4-260ENST00000627685 ATAD2BQ9ULI0 1458 aa14.89□□□□□ -0.03
TCF4-260ENST00000627685 PEG3Q9GZU2 1588 aa14.88□□□□□ -0.03
TCF4-260ENST00000627685 BAZ1AQ9NRL2 1556 aaPredicted RBP14.87□□□□□ -0.03
TCF4-260ENST00000627685 DSG3P32926 999 aa14.87□□□□□ -0.03
TCF4-260ENST00000627685 MROH2BQ7Z745 1585 aa14.85□□□□□ -0.03
TCF4-260ENST00000627685 HMGXB3Q12766 1538 aa14.84□□□□□ -0.03
TCF4-260ENST00000627685 ATF5Q9Y2D1 282 aaPredicted RBP14.84□□□□□ -0.03
TCF4-260ENST00000627685 ABCB7O75027 752 aa14.8□□□□□ -0.04
TCF4-260ENST00000627685 SMARCA2P51531 1590 aa14.8□□□□□ -0.04
TCF4-260ENST00000627685 ATXN8OSP0DMR3 200 aa14.76□□□□□ -0.05
TCF4-260ENST00000627685 POLA2Q14181 598 aa14.68□□□□□ -0.06
TCF4-260ENST00000627685 BAZ1BQ9UIG0 1483 aaKnown RBP14.68□□□□□ -0.06
TCF4-260ENST00000627685 WIZO95785 1651 aa14.65□□□□□ -0.06
TCF4-260ENST00000627685 RSF1Q96T23 1441 aaPredicted RBP14.62□□□□□ -0.07
TCF4-260ENST00000627685 NESP48681 1621 aa14.59□□□□□ -0.07
TCF4-260ENST00000627685 TOP2AP11388 1531 aaKnown RBP14.51□□□□□ -0.09
TCF4-260ENST00000627685 LAMC3Q9Y6N6 1575 aa14.48□□□□□ -0.09
TCF4-260ENST00000627685 THOC2Q8NI27 1593 aaKnown RBP14.46□□□□□ -0.09
TCF4-260ENST00000627685 KIF21AQ7Z4S6 1674 aa14.39□□□□□ -0.11
TCF4-260ENST00000627685 CADPSQ9ULU8 1353 aa14.38□□□□□ -0.11
TCF4-260ENST00000627685 CUX2O14529 1486 aa14.38□□□□□ -0.11
TCF4-260ENST00000627685 ZBTB12Q9Y330 459 aaPredicted RBP14.37□□□□□ -0.11
TCF4-260ENST00000627685 ERCC6Q03468 1493 aa14.37□□□□□ -0.11
TCF4-260ENST00000627685 CFTRP13569 1480 aa14.36□□□□□ -0.11
TCF4-260ENST00000627685 CCDC88BA6NC98 1476 aa14.31□□□□□ -0.12
TCF4-260ENST00000627685 WDR62O43379 1518 aa14.28□□□□□ -0.12
TCF4-260ENST00000627685 PDS5BQ9NTI5 1447 aa14.28□□□□□ -0.12
TCF4-260ENST00000627685 FBLN2P98095 1184 aa14.25□□□□□ -0.13
TCF4-260ENST00000627685 MRC2Q9UBG0 1479 aa14.25□□□□□ -0.13
TCF4-260ENST00000627685 FANCD2Q9BXW9 1451 aa14.24□□□□□ -0.13
TCF4-260ENST00000627685 CEP164Q9UPV0 1460 aa14.21□□□□□ -0.13
TCF4-260ENST00000627685 PRDM2Q13029 1718 aa14.2□□□□□ -0.14
TCF4-260ENST00000627685 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
TCF4-260ENST00000627685 RBM42Q9BTD8 480 aaKnown RBP14.17□□□□□ -0.14
TCF4-260ENST00000627685 MKRN4PQ13434 485 aaPredicted RBP14.16□□□□□ -0.14
TCF4-260ENST00000627685 OSCARQ8IYS5 282 aa14.16□□□□□ -0.14
TCF4-260ENST00000627685 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
TCF4-260ENST00000627685 DNAJC5Q9H3Z4 198 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 159.2 ms