RNA–Protein interactions for RNA: ENST00000602253.5

ZNF546-209, Transcript of zinc finger protein 546, humanhuman

TSL 3

Gene ZNF546, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF546-209ENST00000602253 AEBP2Q6ZN18 517 aaPredicted RBP15.16■□□□□ 0.02
ZNF546-209ENST00000602253 CHIC1Q5VXU3 224 aa14.54□□□□□ -0.08
ZNF546-209ENST00000602253 SENP3Q9H4L4 574 aaPredicted RBP12.82□□□□□ -0.36
ZNF546-209ENST00000602253 PHF23Q9BUL5 403 aaPredicted RBP12.81□□□□□ -0.36
ZNF546-209ENST00000602253 FOXD1Q16676 465 aa11.98□□□□□ -0.49
ZNF546-209ENST00000602253 PLPPR3Q6T4P5 718 aa11.69□□□□□ -0.54
ZNF546-209ENST00000602253 POTEDQ86YR6 584 aa11.51□□□□□ -0.57
ZNF546-209ENST00000602253 PPP6R1Q9UPN7 881 aa11.38□□□□□ -0.59
ZNF546-209ENST00000602253 ADRA2BP18089 450 aa11.35□□□□□ -0.59
ZNF546-209ENST00000602253 PIAS4Q8N2W9 510 aaPredicted RBP11.23□□□□□ -0.61
ZNF546-209ENST00000602253 MSH5O43196 834 aa11.07□□□□□ -0.64
ZNF546-209ENST00000602253 NISCHQ9Y2I1 1504 aa11.01□□□□□ -0.65
ZNF546-209ENST00000602253 ABCC9O60706 1549 aa10.63□□□□□ -0.71
ZNF546-209ENST00000602253 DNAJC5BQ9UF47 199 aa10.52□□□□□ -0.73
ZNF546-209ENST00000602253 MAPK8IP2Q13387 824 aaPredicted RBP10.38□□□□□ -0.75
ZNF546-209ENST00000602253 PPP4R3CPQ6ZMV5 832 aa10.3□□□□□ -0.76
ZNF546-209ENST00000602253 SCAF1Q9H7N4 1312 aaKnown RBP10.29□□□□□ -0.76
ZNF546-209ENST00000602253 DMRT2Q9Y5R5 561 aa10.22□□□□□ -0.77
ZNF546-209ENST00000602253 DNAJC5Q9H3Z4 198 aa10.11□□□□□ -0.79
ZNF546-209ENST00000602253 CCDC180Q9P1Z9 1646 aa10.09□□□□□ -0.79
ZNF546-209ENST00000602253 CNKSR2Q8WXI2 1034 aa10.03□□□□□ -0.8
ZNF546-209ENST00000602253 HOXD11P31277 338 aaPredicted RBP9.92□□□□□ -0.82
ZNF546-209ENST00000602253 NCBP3Q53F19 620 aaKnown RBP9.91□□□□□ -0.82
ZNF546-209ENST00000602253 RB1CC1Q8TDY2 1594 aa9.9□□□□□ -0.82
ZNF546-209ENST00000602253 RNF216Q9NWF9 866 aaPredicted RBP9.89□□□□□ -0.83
ZNF546-209ENST00000602253 PABPN1Q86U42 306 aaKnown RBP eCLIP9.86□□□□□ -0.83
ZNF546-209ENST00000602253 KCNA4P22459 653 aa9.84□□□□□ -0.83
ZNF546-209ENST00000602253 NPM3O75607 178 aaKnown RBP9.83□□□□□ -0.84
ZNF546-209ENST00000602253 DCAF8L1A6NGE4 600 aa9.82□□□□□ -0.84
ZNF546-209ENST00000602253 NACADO15069 1562 aa9.71□□□□□ -0.85
ZNF546-209ENST00000602253 CECR2Q9BXF3 1484 aa9.66□□□□□ -0.86
ZNF546-209ENST00000602253 UNC13AQ9UPW8 1703 aa9.65□□□□□ -0.87
ZNF546-209ENST00000602253 DCAF8L2P0C7V8 631 aa9.62□□□□□ -0.87
ZNF546-209ENST00000602253 BICRAQ9NZM4 1560 aa9.6□□□□□ -0.87
ZNF546-209ENST00000602253 CC2D2AQ9P2K1 1620 aa9.58□□□□□ -0.88
ZNF546-209ENST00000602253 CACNB1Q02641 598 aaPredicted RBP9.57□□□□□ -0.88
ZNF546-209ENST00000602253 RNF39Q9H2S5 420 aa9.5□□□□□ -0.89
ZNF546-209ENST00000602253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.46□□□□□ -0.9
ZNF546-209ENST00000602253 SHROOM4Q9ULL8 1493 aa9.44□□□□□ -0.9
ZNF546-209ENST00000602253 EIF4G1Q04637 1599 aaKnown RBP9.41□□□□□ -0.9
ZNF546-209ENST00000602253 CUX2O14529 1486 aa9.41□□□□□ -0.9
ZNF546-209ENST00000602253 MYO15BQ96JP2 1530 aa9.41□□□□□ -0.9
ZNF546-209ENST00000602253 TRIM41Q8WV44 630 aa9.39□□□□□ -0.91
ZNF546-209ENST00000602253 SLC4A2P04920 1241 aa9.35□□□□□ -0.91
ZNF546-209ENST00000602253 C1QBPQ07021 282 aaKnown RBP9.34□□□□□ -0.91
ZNF546-209ENST00000602253 U3KPZ7 1027 aaPredicted RBP9.31□□□□□ -0.92
ZNF546-209ENST00000602253 SLC4A1APQ9BWU0 796 aaKnown RBP9.3□□□□□ -0.92
ZNF546-209ENST00000602253 ERCC6Q03468 1493 aa9.23□□□□□ -0.93
ZNF546-209ENST00000602253 SCRIBQ14160 1630 aa9.16□□□□□ -0.94
ZNF546-209ENST00000602253 SPINK5Q9NQ38 1064 aaPredicted RBP9.13□□□□□ -0.95
ZNF546-209ENST00000602253 ZBTB22O15209 634 aa9.08□□□□□ -0.96
ZNF546-209ENST00000602253 FOXD4L1Q9NU39 408 aa9.08□□□□□ -0.96
ZNF546-209ENST00000602253 DCAF1Q9Y4B6 1507 aa9.07□□□□□ -0.96
ZNF546-209ENST00000602253 CAPN15O75808 1086 aa9.07□□□□□ -0.96
ZNF546-209ENST00000602253 MYCNP04198 464 aaPredicted RBP9.05□□□□□ -0.96
ZNF546-209ENST00000602253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.03□□□□□ -0.96
ZNF546-209ENST00000602253 HNRNPUL2Q1KMD3 747 aaKnown RBP9.03□□□□□ -0.96
ZNF546-209ENST00000602253 SAMD1Q6SPF0 538 aaPredicted RBP9.01□□□□□ -0.97
ZNF546-209ENST00000602253 NCAPD3P42695 1498 aa8.99□□□□□ -0.97
ZNF546-209ENST00000602253 TRHP20396 242 aaPredicted RBP8.98□□□□□ -0.97
ZNF546-209ENST00000602253 OSCARQ8IYS5 282 aa8.98□□□□□ -0.97
ZNF546-209ENST00000602253 NESP48681 1621 aa8.98□□□□□ -0.97
ZNF546-209ENST00000602253 ZCCHC6Q5VYS8 1495 aaKnown RBP8.97□□□□□ -0.97
ZNF546-209ENST00000602253 DSG3P32926 999 aa8.97□□□□□ -0.97
ZNF546-209ENST00000602253 APLP2Q06481 763 aa8.97□□□□□ -0.97
ZNF546-209ENST00000602253 THOC2Q8NI27 1593 aaKnown RBP8.96□□□□□ -0.97
ZNF546-209ENST00000602253 ZNF219Q9P2Y4 722 aaPredicted RBP8.92□□□□□ -0.98
ZNF546-209ENST00000602253 ABCB7O75027 752 aa8.91□□□□□ -0.98
ZNF546-209ENST00000602253 POTEHQ6S545 545 aa8.9□□□□□ -0.98
ZNF546-209ENST00000602253 ATF5Q9Y2D1 282 aaPredicted RBP8.9□□□□□ -0.98
ZNF546-209ENST00000602253 ATAD2BQ9ULI0 1458 aa8.86□□□□□ -0.99
ZNF546-209ENST00000602253 SMARCA2P51531 1590 aa8.86□□□□□ -0.99
ZNF546-209ENST00000602253 BAZ1AQ9NRL2 1556 aaPredicted RBP8.86□□□□□ -0.99
ZNF546-209ENST00000602253 PDS5BQ9NTI5 1447 aa8.85□□□□□ -0.99
ZNF546-209ENST00000602253 LAMC3Q9Y6N6 1575 aa8.85□□□□□ -0.99
ZNF546-209ENST00000602253 EHMT2Q96KQ7 1210 aa8.83□□□□□ -1
ZNF546-209ENST00000602253 KIF21AQ7Z4S6 1674 aa8.82□□□□□ -1
ZNF546-209ENST00000602253 HMGXB3Q12766 1538 aa8.82□□□□□ -1
ZNF546-209ENST00000602253 RIMBP3CA6NJZ7 1639 aa8.81□□□□□ -1
ZNF546-209ENST00000602253 RIMBP3BA6NNM3 1639 aa8.81□□□□□ -1
ZNF546-209ENST00000602253 RIMBP3Q9UFD9 1639 aa8.81□□□□□ -1
ZNF546-209ENST00000602253 CSRNP3Q8WYN3 585 aa8.81□□□□□ -1
ZNF546-209ENST00000602253 POLA2Q14181 598 aa8.79□□□□□ -1
ZNF546-209ENST00000602253 CYB5RLQ6IPT4 315 aa8.79□□□□□ -1
ZNF546-209ENST00000602253 MRC2Q9UBG0 1479 aa8.76□□□□□ -1.01
ZNF546-209ENST00000602253 ATXN8OSP0DMR3 200 aa8.74□□□□□ -1.01
ZNF546-209ENST00000602253 BAZ1BQ9UIG0 1483 aaKnown RBP8.73□□□□□ -1.01
ZNF546-209ENST00000602253 ARHGEF11O15085 1522 aa8.73□□□□□ -1.01
ZNF546-209ENST00000602253 WDR62O43379 1518 aa8.73□□□□□ -1.01
ZNF546-209ENST00000602253 ILDR1Q86SU0 546 aaPredicted RBP8.71□□□□□ -1.02
ZNF546-209ENST00000602253 CADPSQ9ULU8 1353 aa8.7□□□□□ -1.02
ZNF546-209ENST00000602253 SMARCA4P51532 1647 aa8.68□□□□□ -1.02
ZNF546-209ENST00000602253 PEG3Q9GZU2 1588 aa8.61□□□□□ -1.03
ZNF546-209ENST00000602253 CEP164Q9UPV0 1460 aa8.61□□□□□ -1.03
ZNF546-209ENST00000602253 ARAP1Q96P48 1450 aa8.59□□□□□ -1.03
ZNF546-209ENST00000602253 FANCD2Q9BXW9 1451 aa8.57□□□□□ -1.04
ZNF546-209ENST00000602253 ZBTB12Q9Y330 459 aaPredicted RBP8.56□□□□□ -1.04
ZNF546-209ENST00000602253 RSF1Q96T23 1441 aaPredicted RBP8.54□□□□□ -1.04
ZNF546-209ENST00000602253 URB2Q14146 1524 aaKnown RBP8.51□□□□□ -1.05
ZNF546-209ENST00000602253 RBM42Q9BTD8 480 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 195.7 ms