RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 NISCHQ9Y2I1 1504 aa24.25■■□□□ 1.47
ZNF540-210ENST00000592533 CCDC180Q9P1Z9 1646 aa20.8■□□□□ 0.92
ZNF540-210ENST00000592533 ZCCHC6Q5VYS8 1495 aaKnown RBP20.57■□□□□ 0.88
ZNF540-210ENST00000592533 SHROOM4Q9ULL8 1493 aa20.32■□□□□ 0.84
ZNF540-210ENST00000592533 DCAF1Q9Y4B6 1507 aa20.08■□□□□ 0.8
ZNF540-210ENST00000592533 SUPT5HO00267 1087 aaKnown RBP19.94■□□□□ 0.78
ZNF540-210ENST00000592533 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
ZNF540-210ENST00000592533 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
ZNF540-210ENST00000592533 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.72
ZNF540-210ENST00000592533 ABCC9O60706 1549 aa19.46■□□□□ 0.71
ZNF540-210ENST00000592533 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
ZNF540-210ENST00000592533 RSF1Q96T23 1441 aaPredicted RBP19.14■□□□□ 0.65
ZNF540-210ENST00000592533 HRCP23327 699 aa19.13■□□□□ 0.65
ZNF540-210ENST00000592533 NACADO15069 1562 aa19.1■□□□□ 0.65
ZNF540-210ENST00000592533 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
ZNF540-210ENST00000592533 PCGF6Q9BYE7 350 aa18.91■□□□□ 0.62
ZNF540-210ENST00000592533 LOC105371045A0A1W2PR82 267 aa18.87■□□□□ 0.61
ZNF540-210ENST00000592533 MROH2BQ7Z745 1585 aa18.79■□□□□ 0.6
ZNF540-210ENST00000592533 CECR2Q9BXF3 1484 aa18.78■□□□□ 0.6
ZNF540-210ENST00000592533 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
ZNF540-210ENST00000592533 WIZO95785 1651 aa18.71■□□□□ 0.59
ZNF540-210ENST00000592533 TRIM26Q12899 539 aaPredicted RBP18.7■□□□□ 0.58
ZNF540-210ENST00000592533 TRIM41Q8WV44 630 aa18.68■□□□□ 0.58
ZNF540-210ENST00000592533 EIF4G1Q04637 1599 aaKnown RBP18.66■□□□□ 0.58
ZNF540-210ENST00000592533 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
ZNF540-210ENST00000592533 PPARGC1BQ86YN6 1023 aaKnown RBP18.52■□□□□ 0.55
ZNF540-210ENST00000592533 TOP2AP11388 1531 aaKnown RBP18.51■□□□□ 0.55
ZNF540-210ENST00000592533 SMARCA4P51532 1647 aa18.49■□□□□ 0.55
ZNF540-210ENST00000592533 ZEB1P37275 1124 aaPredicted RBP18.39■□□□□ 0.53
ZNF540-210ENST00000592533 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
ZNF540-210ENST00000592533 FAM9AQ8IZU1 332 aaPredicted RBP18.36■□□□□ 0.53
ZNF540-210ENST00000592533 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
ZNF540-210ENST00000592533 PEG3Q9GZU2 1588 aa18.25■□□□□ 0.51
ZNF540-210ENST00000592533 ABCC8Q09428 1581 aa18.24■□□□□ 0.51
ZNF540-210ENST00000592533 BICRAQ9NZM4 1560 aa18.23■□□□□ 0.51
ZNF540-210ENST00000592533 WRNQ14191 1432 aaPredicted RBP eCLIP18.18■□□□□ 0.5
ZNF540-210ENST00000592533 EEA1Q15075 1411 aa18.16■□□□□ 0.5
ZNF540-210ENST00000592533 TNIKQ9UKE5 1360 aa18.06■□□□□ 0.48
ZNF540-210ENST00000592533 EHMT2Q96KQ7 1210 aa18.05■□□□□ 0.48
ZNF540-210ENST00000592533 CEP162Q5TB80 1403 aa18.04■□□□□ 0.48
ZNF540-210ENST00000592533 SOGA1O94964 1423 aa18.04■□□□□ 0.48
ZNF540-210ENST00000592533 KIF21BO75037 1637 aa17.96■□□□□ 0.46
ZNF540-210ENST00000592533 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
ZNF540-210ENST00000592533 RUSC2Q8N2Y8 1516 aa17.94■□□□□ 0.46
ZNF540-210ENST00000592533 SYNJ1O43426 1573 aa17.93■□□□□ 0.46
ZNF540-210ENST00000592533 CSRNP3Q8WYN3 585 aa17.93■□□□□ 0.46
ZNF540-210ENST00000592533 ATAD2BQ9ULI0 1458 aa17.92■□□□□ 0.46
ZNF540-210ENST00000592533 CEP164Q9UPV0 1460 aa17.86■□□□□ 0.45
ZNF540-210ENST00000592533 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
ZNF540-210ENST00000592533 BAZ1BQ9UIG0 1483 aaKnown RBP17.85■□□□□ 0.45
ZNF540-210ENST00000592533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
ZNF540-210ENST00000592533 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
ZNF540-210ENST00000592533 CCER1Q8TC90 406 aaPredicted RBP17.78■□□□□ 0.44
ZNF540-210ENST00000592533 BIVM-ERCC5R4GMW8 1640 aa17.78■□□□□ 0.44
ZNF540-210ENST00000592533 UBTFP17480 764 aaKnown RBP17.73■□□□□ 0.43
ZNF540-210ENST00000592533 HMGXB3Q12766 1538 aa17.7■□□□□ 0.42
ZNF540-210ENST00000592533 CLIP1P30622 1438 aa17.68■□□□□ 0.42
ZNF540-210ENST00000592533 VPS8Q8N3P4 1428 aa17.68■□□□□ 0.42
ZNF540-210ENST00000592533 ERICH3Q5RHP9 1530 aa17.65■□□□□ 0.42
ZNF540-210ENST00000592533 RAPGEF2Q9Y4G8 1499 aa17.64■□□□□ 0.42
ZNF540-210ENST00000592533 NCAPD3P42695 1498 aa17.61■□□□□ 0.41
ZNF540-210ENST00000592533 SCAF1Q9H7N4 1312 aaKnown RBP17.58■□□□□ 0.41
ZNF540-210ENST00000592533 PRDM2Q13029 1718 aa17.58■□□□□ 0.4
ZNF540-210ENST00000592533 PRXQ9BXM0 1461 aa17.57■□□□□ 0.4
ZNF540-210ENST00000592533 TTBK1Q5TCY1 1321 aaPredicted RBP17.53■□□□□ 0.4
ZNF540-210ENST00000592533 CUX1P39880 1505 aa17.51■□□□□ 0.39
ZNF540-210ENST00000592533 DIEXFQ68CQ4 756 aaKnown RBP17.51■□□□□ 0.39
ZNF540-210ENST00000592533 CFTRP13569 1480 aa17.48■□□□□ 0.39
ZNF540-210ENST00000592533 ARAP1Q96P48 1450 aa17.46■□□□□ 0.39
ZNF540-210ENST00000592533 ACIN1Q9UKV3 1341 aaKnown RBP17.45■□□□□ 0.38
ZNF540-210ENST00000592533 PELP1Q8IZL8 1130 aaKnown RBP17.45■□□□□ 0.38
ZNF540-210ENST00000592533 ZNF316A6NFI3 1004 aaPredicted RBP17.42■□□□□ 0.38
ZNF540-210ENST00000592533 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
ZNF540-210ENST00000592533 APLP2Q06481 763 aa17.38■□□□□ 0.37
ZNF540-210ENST00000592533 NEUROD1Q13562 356 aa17.36■□□□□ 0.37
ZNF540-210ENST00000592533 CENPBP07199 599 aaPredicted RBP17.34■□□□□ 0.37
ZNF540-210ENST00000592533 CLSPNQ9HAW4 1339 aa17.34■□□□□ 0.37
ZNF540-210ENST00000592533 HNRNPUL2Q1KMD3 747 aaKnown RBP17.34■□□□□ 0.37
ZNF540-210ENST00000592533 RRBP1Q9P2E9 1410 aaKnown RBP17.32■□□□□ 0.36
ZNF540-210ENST00000592533 CUX2O14529 1486 aa17.3■□□□□ 0.36
ZNF540-210ENST00000592533 ARHGAP35Q9NRY4 1499 aa17.28■□□□□ 0.36
ZNF540-210ENST00000592533 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
ZNF540-210ENST00000592533 DHX57Q6P158 1386 aaKnown RBP17.23■□□□□ 0.35
ZNF540-210ENST00000592533 CADPSQ9ULU8 1353 aa17.2■□□□□ 0.34
ZNF540-210ENST00000592533 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
ZNF540-210ENST00000592533 IGF1RP08069 1367 aa17.18■□□□□ 0.34
ZNF540-210ENST00000592533 TIAM1Q13009 1591 aa17.17■□□□□ 0.34
ZNF540-210ENST00000592533 RANGAP1P46060 587 aaPredicted RBP17.17■□□□□ 0.34
ZNF540-210ENST00000592533 GTF3C3Q9Y5Q9 886 aa17.16■□□□□ 0.34
ZNF540-210ENST00000592533 FGD5Q6ZNL6 1462 aa17.15■□□□□ 0.34
ZNF540-210ENST00000592533 CFAP43Q8NDM7 1665 aa17.14■□□□□ 0.33
ZNF540-210ENST00000592533 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
ZNF540-210ENST00000592533 MIER1Q8N108 512 aa17.11■□□□□ 0.33
ZNF540-210ENST00000592533 CC2D2AQ9P2K1 1620 aa17.09■□□□□ 0.33
ZNF540-210ENST00000592533 CARMIL1Q5VZK9 1371 aa17.09■□□□□ 0.33
ZNF540-210ENST00000592533 DNMBPQ6XZF7 1577 aa17.08■□□□□ 0.32
ZNF540-210ENST00000592533 LRRC9Q6ZRR7 1453 aa17.05■□□□□ 0.32
ZNF540-210ENST00000592533 CUL7Q14999 1698 aa17.04■□□□□ 0.32
ZNF540-210ENST00000592533 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
ZNF540-210ENST00000592533 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms