RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-222ENST00000582594 NISCHQ9Y2I1 1504 aa18.66■□□□□ 0.58
PPP4R1-222ENST00000582594 SHROOM4Q9ULL8 1493 aa16.51■□□□□ 0.23
PPP4R1-222ENST00000582594 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
PPP4R1-222ENST00000582594 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
PPP4R1-222ENST00000582594 HRCP23327 699 aa16.05■□□□□ 0.16
PPP4R1-222ENST00000582594 MYO15BQ96JP2 1530 aa16■□□□□ 0.15
PPP4R1-222ENST00000582594 CHIC1Q5VXU3 224 aa15.93■□□□□ 0.14
PPP4R1-222ENST00000582594 PCGF6Q9BYE7 350 aa15.92■□□□□ 0.14
PPP4R1-222ENST00000582594 PPARGC1BQ86YN6 1023 aaKnown RBP15.85■□□□□ 0.13
PPP4R1-222ENST00000582594 ZCCHC6Q5VYS8 1495 aaKnown RBP15.83■□□□□ 0.12
PPP4R1-222ENST00000582594 DCAF8L2P0C7V8 631 aa15.74■□□□□ 0.11
PPP4R1-222ENST00000582594 LOC105371045A0A1W2PR82 267 aa15.6■□□□□ 0.09
PPP4R1-222ENST00000582594 DCAF1Q9Y4B6 1507 aa15.5■□□□□ 0.07
PPP4R1-222ENST00000582594 TRIM26Q12899 539 aaPredicted RBP15.39■□□□□ 0.05
PPP4R1-222ENST00000582594 NACADO15069 1562 aa15.29■□□□□ 0.04
PPP4R1-222ENST00000582594 RB1CC1Q8TDY2 1594 aa15.21■□□□□ 0.03
PPP4R1-222ENST00000582594 FAM9AQ8IZU1 332 aaPredicted RBP15.15■□□□□ 0.02
PPP4R1-222ENST00000582594 EHMT2Q96KQ7 1210 aa15.15■□□□□ 0.02
PPP4R1-222ENST00000582594 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
PPP4R1-222ENST00000582594 SCAF1Q9H7N4 1312 aaKnown RBP15.1■□□□□ 0.01
PPP4R1-222ENST00000582594 ABCC9O60706 1549 aa15.1■□□□□ 0.01
PPP4R1-222ENST00000582594 TRIM41Q8WV44 630 aa15.09■□□□□ 0.01
PPP4R1-222ENST00000582594 PELP1Q8IZL8 1130 aaKnown RBP15.04■□□□□ -0
PPP4R1-222ENST00000582594 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
PPP4R1-222ENST00000582594 UNC13AQ9UPW8 1703 aa14.91□□□□□ -0.02
PPP4R1-222ENST00000582594 SCRIBQ14160 1630 aa14.91□□□□□ -0.02
PPP4R1-222ENST00000582594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
PPP4R1-222ENST00000582594 CCER1Q8TC90 406 aaPredicted RBP14.79□□□□□ -0.04
PPP4R1-222ENST00000582594 NEUROD1Q13562 356 aa14.78□□□□□ -0.04
PPP4R1-222ENST00000582594 ACIN1Q9UKV3 1341 aaKnown RBP14.77□□□□□ -0.04
PPP4R1-222ENST00000582594 TTBK1Q5TCY1 1321 aaPredicted RBP14.73□□□□□ -0.05
PPP4R1-222ENST00000582594 BICRAQ9NZM4 1560 aa14.71□□□□□ -0.05
PPP4R1-222ENST00000582594 GTF3C3Q9Y5Q9 886 aa14.68□□□□□ -0.06
PPP4R1-222ENST00000582594 DIEXFQ68CQ4 756 aaKnown RBP14.67□□□□□ -0.06
PPP4R1-222ENST00000582594 CECR2Q9BXF3 1484 aa14.66□□□□□ -0.06
PPP4R1-222ENST00000582594 MROH2BQ7Z745 1585 aa14.61□□□□□ -0.07
PPP4R1-222ENST00000582594 CENPBP07199 599 aaPredicted RBP14.61□□□□□ -0.07
PPP4R1-222ENST00000582594 WIZO95785 1651 aa14.58□□□□□ -0.08
PPP4R1-222ENST00000582594 YTHDC1Q96MU7 727 aaKnown RBP14.5□□□□□ -0.09
PPP4R1-222ENST00000582594 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
PPP4R1-222ENST00000582594 ZNF316A6NFI3 1004 aaPredicted RBP14.43□□□□□ -0.1
PPP4R1-222ENST00000582594 CEP162Q5TB80 1403 aa14.42□□□□□ -0.1
PPP4R1-222ENST00000582594 CCDC88BA6NC98 1476 aa14.41□□□□□ -0.1
PPP4R1-222ENST00000582594 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
PPP4R1-222ENST00000582594 BAZ1AQ9NRL2 1556 aaPredicted RBP14.39□□□□□ -0.11
PPP4R1-222ENST00000582594 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
PPP4R1-222ENST00000582594 UBTFP17480 764 aaKnown RBP14.37□□□□□ -0.11
PPP4R1-222ENST00000582594 SOGA1O94964 1423 aa14.36□□□□□ -0.11
PPP4R1-222ENST00000582594 MIER1Q8N108 512 aa14.34□□□□□ -0.11
PPP4R1-222ENST00000582594 MYT1Q01538 1121 aa14.34□□□□□ -0.11
PPP4R1-222ENST00000582594 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
PPP4R1-222ENST00000582594 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
PPP4R1-222ENST00000582594 RUSC2Q8N2Y8 1516 aa14.3□□□□□ -0.12
PPP4R1-222ENST00000582594 CSRNP3Q8WYN3 585 aa14.28□□□□□ -0.12
PPP4R1-222ENST00000582594 TOP2AP11388 1531 aaKnown RBP14.23□□□□□ -0.13
PPP4R1-222ENST00000582594 SMARCA2P51531 1590 aa14.21□□□□□ -0.14
PPP4R1-222ENST00000582594 GOLGA3Q08378 1498 aa14.17□□□□□ -0.14
PPP4R1-222ENST00000582594 RANGAP1P46060 587 aaPredicted RBP14.16□□□□□ -0.14
PPP4R1-222ENST00000582594 PEG3Q9GZU2 1588 aa14.16□□□□□ -0.14
PPP4R1-222ENST00000582594 SMARCA4P51532 1647 aa14.15□□□□□ -0.14
PPP4R1-222ENST00000582594 EEA1Q15075 1411 aa14.15□□□□□ -0.14
PPP4R1-222ENST00000582594 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
PPP4R1-222ENST00000582594 APLP2Q06481 763 aa14.08□□□□□ -0.16
PPP4R1-222ENST00000582594 CLIP1P30622 1438 aa14.07□□□□□ -0.16
PPP4R1-222ENST00000582594 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
PPP4R1-222ENST00000582594 CEP164Q9UPV0 1460 aa14.03□□□□□ -0.16
PPP4R1-222ENST00000582594 VPS8Q8N3P4 1428 aa14.01□□□□□ -0.17
PPP4R1-222ENST00000582594 SUPT16HQ9Y5B9 1047 aaKnown RBP14□□□□□ -0.17
PPP4R1-222ENST00000582594 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
PPP4R1-222ENST00000582594 KIF21BO75037 1637 aa13.97□□□□□ -0.17
PPP4R1-222ENST00000582594 PABPN1Q86U42 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
PPP4R1-222ENST00000582594 RAPGEF2Q9Y4G8 1499 aa13.96□□□□□ -0.17
PPP4R1-222ENST00000582594 NCAPD3P42695 1498 aa13.94□□□□□ -0.18
PPP4R1-222ENST00000582594 DHX57Q6P158 1386 aaKnown RBP13.93□□□□□ -0.18
PPP4R1-222ENST00000582594 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
PPP4R1-222ENST00000582594 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
PPP4R1-222ENST00000582594 KANK4Q5T7N3 995 aaPredicted RBP13.87□□□□□ -0.19
PPP4R1-222ENST00000582594 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
PPP4R1-222ENST00000582594 KCNH8Q96L42 1107 aa13.86□□□□□ -0.19
PPP4R1-222ENST00000582594 CLSPNQ9HAW4 1339 aa13.85□□□□□ -0.19
PPP4R1-222ENST00000582594 ITGAEP38570 1179 aa13.85□□□□□ -0.19
PPP4R1-222ENST00000582594 BCANQ96GW7 911 aa13.84□□□□□ -0.19
PPP4R1-222ENST00000582594 CUX2O14529 1486 aa13.78□□□□□ -0.2
PPP4R1-222ENST00000582594 ARAP1Q96P48 1450 aa13.78□□□□□ -0.2
PPP4R1-222ENST00000582594 ANP32EQ9BTT0 268 aa13.77□□□□□ -0.2
PPP4R1-222ENST00000582594 FKBP8Q14318 412 aa13.73□□□□□ -0.21
PPP4R1-222ENST00000582594 PRDM2Q13029 1718 aa13.72□□□□□ -0.21
PPP4R1-222ENST00000582594 LAMC3Q9Y6N6 1575 aa13.72□□□□□ -0.21
PPP4R1-222ENST00000582594 ATAD2BQ9ULI0 1458 aa13.71□□□□□ -0.21
PPP4R1-222ENST00000582594 RRBP1Q9P2E9 1410 aaKnown RBP13.71□□□□□ -0.21
PPP4R1-222ENST00000582594 TOP2BQ02880 1626 aa13.7□□□□□ -0.22
PPP4R1-222ENST00000582594 DDX10Q13206 875 aaKnown RBP13.7□□□□□ -0.22
PPP4R1-222ENST00000582594 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
PPP4R1-222ENST00000582594 PRXQ9BXM0 1461 aa13.68□□□□□ -0.22
PPP4R1-222ENST00000582594 RAB3GAP2Q9H2M9 1393 aa13.66□□□□□ -0.22
PPP4R1-222ENST00000582594 ERICH3Q5RHP9 1530 aa13.66□□□□□ -0.22
PPP4R1-222ENST00000582594 HIRIP3Q9BW71 556 aaPredicted RBP13.66□□□□□ -0.22
PPP4R1-222ENST00000582594 SIN3AQ96ST3 1273 aa13.65□□□□□ -0.22
PPP4R1-222ENST00000582594 MAPKBP1O60336 1514 aa13.63□□□□□ -0.23
PPP4R1-222ENST00000582594 BIVM-ERCC5R4GMW8 1640 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms