RNA–Protein interactions for RNA: ENST00000579638.5

PPP4R1-214, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-214ENST00000579638 AEBP2Q6ZN18 517 aaPredicted RBP20.78■□□□□ 0.92
PPP4R1-214ENST00000579638 CHIC1Q5VXU3 224 aa20.7■□□□□ 0.9
PPP4R1-214ENST00000579638 PHF23Q9BUL5 403 aaPredicted RBP18.23■□□□□ 0.51
PPP4R1-214ENST00000579638 NISCHQ9Y2I1 1504 aa17.65■□□□□ 0.42
PPP4R1-214ENST00000579638 SENP3Q9H4L4 574 aaPredicted RBP17.59■□□□□ 0.41
PPP4R1-214ENST00000579638 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
PPP4R1-214ENST00000579638 ABCC9O60706 1549 aa16.53■□□□□ 0.24
PPP4R1-214ENST00000579638 FOXD1Q16676 465 aa16.27■□□□□ 0.2
PPP4R1-214ENST00000579638 CCDC180Q9P1Z9 1646 aa16.04■□□□□ 0.16
PPP4R1-214ENST00000579638 DNAJC5BQ9UF47 199 aa16■□□□□ 0.15
PPP4R1-214ENST00000579638 ADRA2BP18089 450 aa15.98■□□□□ 0.15
PPP4R1-214ENST00000579638 PPP6R1Q9UPN7 881 aa15.96■□□□□ 0.15
PPP4R1-214ENST00000579638 RB1CC1Q8TDY2 1594 aa15.49■□□□□ 0.07
PPP4R1-214ENST00000579638 PIAS4Q8N2W9 510 aaPredicted RBP15.45■□□□□ 0.06
PPP4R1-214ENST00000579638 PABPN1Q86U42 306 aaKnown RBP eCLIP15.33■□□□□ 0.04
PPP4R1-214ENST00000579638 NACADO15069 1562 aa15.27■□□□□ 0.03
PPP4R1-214ENST00000579638 UNC13AQ9UPW8 1703 aa15.24■□□□□ 0.03
PPP4R1-214ENST00000579638 KCNA4P22459 653 aa15.12■□□□□ 0.01
PPP4R1-214ENST00000579638 BICRAQ9NZM4 1560 aa15.11■□□□□ 0.01
PPP4R1-214ENST00000579638 DCAF8L2P0C7V8 631 aa15.11■□□□□ 0.01
PPP4R1-214ENST00000579638 PPP4R3CPQ6ZMV5 832 aa15.02■□□□□ -0
PPP4R1-214ENST00000579638 DNAJC5Q9H3Z4 198 aa15.01□□□□□ -0.01
PPP4R1-214ENST00000579638 CECR2Q9BXF3 1484 aa14.93□□□□□ -0.02
PPP4R1-214ENST00000579638 CC2D2AQ9P2K1 1620 aa14.92□□□□□ -0.02
PPP4R1-214ENST00000579638 MYO15BQ96JP2 1530 aa14.9□□□□□ -0.02
PPP4R1-214ENST00000579638 MSH5O43196 834 aa14.87□□□□□ -0.03
PPP4R1-214ENST00000579638 SHROOM4Q9ULL8 1493 aa14.77□□□□□ -0.04
PPP4R1-214ENST00000579638 NCBP3Q53F19 620 aaKnown RBP14.77□□□□□ -0.05
PPP4R1-214ENST00000579638 EIF4G1Q04637 1599 aaKnown RBP14.75□□□□□ -0.05
PPP4R1-214ENST00000579638 SCAF1Q9H7N4 1312 aaKnown RBP14.65□□□□□ -0.06
PPP4R1-214ENST00000579638 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
PPP4R1-214ENST00000579638 EHMT2Q96KQ7 1210 aa14.53□□□□□ -0.08
PPP4R1-214ENST00000579638 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
PPP4R1-214ENST00000579638 NPM3O75607 178 aaKnown RBP14.52□□□□□ -0.09
PPP4R1-214ENST00000579638 CNKSR2Q8WXI2 1034 aa14.52□□□□□ -0.09
PPP4R1-214ENST00000579638 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
PPP4R1-214ENST00000579638 SLC4A1APQ9BWU0 796 aaKnown RBP14.48□□□□□ -0.09
PPP4R1-214ENST00000579638 CUX2O14529 1486 aa14.42□□□□□ -0.1
PPP4R1-214ENST00000579638 MAPK8IP2Q13387 824 aaPredicted RBP14.38□□□□□ -0.11
PPP4R1-214ENST00000579638 ERCC6Q03468 1493 aa14.27□□□□□ -0.12
PPP4R1-214ENST00000579638 CSRNP3Q8WYN3 585 aa14.16□□□□□ -0.14
PPP4R1-214ENST00000579638 TRIM41Q8WV44 630 aa14.13□□□□□ -0.15
PPP4R1-214ENST00000579638 RNF216Q9NWF9 866 aaPredicted RBP14.13□□□□□ -0.15
PPP4R1-214ENST00000579638 NCAPD3P42695 1498 aa14.12□□□□□ -0.15
PPP4R1-214ENST00000579638 DMRT2Q9Y5R5 561 aa14.1□□□□□ -0.15
PPP4R1-214ENST00000579638 NESP48681 1621 aa14.08□□□□□ -0.15
PPP4R1-214ENST00000579638 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.16
PPP4R1-214ENST00000579638 ATAD2BQ9ULI0 1458 aa14□□□□□ -0.17
PPP4R1-214ENST00000579638 HOXD11P31277 338 aaPredicted RBP13.96□□□□□ -0.17
PPP4R1-214ENST00000579638 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
PPP4R1-214ENST00000579638 SMARCA2P51531 1590 aa13.92□□□□□ -0.18
PPP4R1-214ENST00000579638 ZBTB22O15209 634 aa13.91□□□□□ -0.18
PPP4R1-214ENST00000579638 KIF21AQ7Z4S6 1674 aa13.89□□□□□ -0.19
PPP4R1-214ENST00000579638 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
PPP4R1-214ENST00000579638 LAMC3Q9Y6N6 1575 aa13.87□□□□□ -0.19
PPP4R1-214ENST00000579638 BAZ1BQ9UIG0 1483 aaKnown RBP13.83□□□□□ -0.2
PPP4R1-214ENST00000579638 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
PPP4R1-214ENST00000579638 PDS5BQ9NTI5 1447 aa13.79□□□□□ -0.2
PPP4R1-214ENST00000579638 PEG3Q9GZU2 1588 aa13.74□□□□□ -0.21
PPP4R1-214ENST00000579638 BAZ1AQ9NRL2 1556 aaPredicted RBP13.74□□□□□ -0.21
PPP4R1-214ENST00000579638 MRC2Q9UBG0 1479 aa13.71□□□□□ -0.21
PPP4R1-214ENST00000579638 OSCARQ8IYS5 282 aa13.7□□□□□ -0.22
PPP4R1-214ENST00000579638 WDR62O43379 1518 aa13.69□□□□□ -0.22
PPP4R1-214ENST00000579638 CADPSQ9ULU8 1353 aa13.66□□□□□ -0.22
PPP4R1-214ENST00000579638 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
PPP4R1-214ENST00000579638 MROH2BQ7Z745 1585 aa13.61□□□□□ -0.23
PPP4R1-214ENST00000579638 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
PPP4R1-214ENST00000579638 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
PPP4R1-214ENST00000579638 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
PPP4R1-214ENST00000579638 CEP164Q9UPV0 1460 aa13.55□□□□□ -0.24
PPP4R1-214ENST00000579638 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
PPP4R1-214ENST00000579638 DCAF8L1A6NGE4 600 aa13.5□□□□□ -0.25
PPP4R1-214ENST00000579638 ARHGEF11O15085 1522 aa13.49□□□□□ -0.25
PPP4R1-214ENST00000579638 URB2Q14146 1524 aaKnown RBP13.44□□□□□ -0.26
PPP4R1-214ENST00000579638 WIZO95785 1651 aa13.44□□□□□ -0.26
PPP4R1-214ENST00000579638 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
PPP4R1-214ENST00000579638 TRHP20396 242 aaPredicted RBP13.42□□□□□ -0.26
PPP4R1-214ENST00000579638 CYB5RLQ6IPT4 315 aa13.42□□□□□ -0.26
PPP4R1-214ENST00000579638 CFTRP13569 1480 aa13.41□□□□□ -0.26
PPP4R1-214ENST00000579638 ZNF608Q9ULD9 1512 aaPredicted RBP13.37□□□□□ -0.27
PPP4R1-214ENST00000579638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.272e-10■□□□□ 10.5
PPP4R1-214ENST00000579638 ARAP1Q96P48 1450 aa13.33□□□□□ -0.28
PPP4R1-214ENST00000579638 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
PPP4R1-214ENST00000579638 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
PPP4R1-214ENST00000579638 CHD1O14646 1710 aa13.28□□□□□ -0.28
PPP4R1-214ENST00000579638 PRDM2Q13029 1718 aa13.27□□□□□ -0.29
PPP4R1-214ENST00000579638 EIF4G3O43432 1585 aaKnown RBP13.25□□□□□ -0.29
PPP4R1-214ENST00000579638 RSF1Q96T23 1441 aaPredicted RBP13.22□□□□□ -0.29
PPP4R1-214ENST00000579638 TOPBP1Q92547 1522 aa13.21□□□□□ -0.29
PPP4R1-214ENST00000579638 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
PPP4R1-214ENST00000579638 AQRO60306 1485 aaKnown RBP eCLIP13.18□□□□□ -0.37e-12■□□□□ 9.9
PPP4R1-214ENST00000579638 FBLN2P98095 1184 aa13.17□□□□□ -0.3
PPP4R1-214ENST00000579638 TARBP1Q13395 1621 aaKnown RBP13.14□□□□□ -0.31
PPP4R1-214ENST00000579638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.14□□□□□ -0.31
PPP4R1-214ENST00000579638 HNRNPUL2Q1KMD3 747 aaKnown RBP13.14□□□□□ -0.31
PPP4R1-214ENST00000579638 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
PPP4R1-214ENST00000579638 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
PPP4R1-214ENST00000579638 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
PPP4R1-214ENST00000579638 DNMBPQ6XZF7 1577 aa13.1□□□□□ -0.31
PPP4R1-214ENST00000579638 CLASP1Q7Z460 1538 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms