RNA–Protein interactions for RNA: ENST00000574781.1

ERCC4-206, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 3

Gene ERCC4, Length 638 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-206ENST00000574781 AEBP2Q6ZN18 517 aaPredicted RBP24.92■■□□□ 1.58
ERCC4-206ENST00000574781 CHIC1Q5VXU3 224 aa23.4■■□□□ 1.34
ERCC4-206ENST00000574781 SENP3Q9H4L4 574 aaPredicted RBP21.55■■□□□ 1.04
ERCC4-206ENST00000574781 PHF23Q9BUL5 403 aaPredicted RBP21.1■□□□□ 0.97
ERCC4-206ENST00000574781 POTEDQ86YR6 584 aa20.9■□□□□ 0.94
ERCC4-206ENST00000574781 FOXD1Q16676 465 aa20.18■□□□□ 0.82
ERCC4-206ENST00000574781 NISCHQ9Y2I1 1504 aa19.81■□□□□ 0.76
ERCC4-206ENST00000574781 MSH5O43196 834 aa19.39■□□□□ 0.69
ERCC4-206ENST00000574781 PIAS4Q8N2W9 510 aaPredicted RBP18.68■□□□□ 0.58
ERCC4-206ENST00000574781 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
ERCC4-206ENST00000574781 ABCC9O60706 1549 aa17.98■□□□□ 0.47
ERCC4-206ENST00000574781 PPP6R1Q9UPN7 881 aa17.95■□□□□ 0.46
ERCC4-206ENST00000574781 ADRA2BP18089 450 aa17.89■□□□□ 0.45
ERCC4-206ENST00000574781 CCDC180Q9P1Z9 1646 aa17.66■□□□□ 0.42
ERCC4-206ENST00000574781 CACNB1Q02641 598 aaPredicted RBP17.46■□□□□ 0.39
ERCC4-206ENST00000574781 DCAF8L2P0C7V8 631 aa17.05■□□□□ 0.32
ERCC4-206ENST00000574781 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.32
ERCC4-206ENST00000574781 RB1CC1Q8TDY2 1594 aa16.94■□□□□ 0.3
ERCC4-206ENST00000574781 PABPN1Q86U42 306 aaKnown RBP eCLIP16.84■□□□□ 0.29
ERCC4-206ENST00000574781 DMRT2Q9Y5R5 561 aa16.84■□□□□ 0.29
ERCC4-206ENST00000574781 NACADO15069 1562 aa16.8■□□□□ 0.28
ERCC4-206ENST00000574781 MAPK8IP2Q13387 824 aaPredicted RBP16.78■□□□□ 0.28
ERCC4-206ENST00000574781 UNC13AQ9UPW8 1703 aa16.51■□□□□ 0.23
ERCC4-206ENST00000574781 DCAF8L1A6NGE4 600 aa16.48■□□□□ 0.23
ERCC4-206ENST00000574781 MYO15BQ96JP2 1530 aa16.48■□□□□ 0.23
ERCC4-206ENST00000574781 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
ERCC4-206ENST00000574781 SCAF1Q9H7N4 1312 aaKnown RBP16.44■□□□□ 0.22
ERCC4-206ENST00000574781 RNF39Q9H2S5 420 aa16.37■□□□□ 0.21
ERCC4-206ENST00000574781 ZCCHC6Q5VYS8 1495 aaKnown RBP16.35■□□□□ 0.21
ERCC4-206ENST00000574781 DCAF1Q9Y4B6 1507 aa16.26■□□□□ 0.19
ERCC4-206ENST00000574781 SCRIBQ14160 1630 aa16.25■□□□□ 0.19
ERCC4-206ENST00000574781 POTEHQ6S545 545 aa16.19■□□□□ 0.18
ERCC4-206ENST00000574781 CECR2Q9BXF3 1484 aa16.16■□□□□ 0.18
ERCC4-206ENST00000574781 CC2D2AQ9P2K1 1620 aa16.14■□□□□ 0.17
ERCC4-206ENST00000574781 C1QBPQ07021 282 aaKnown RBP16.12■□□□□ 0.17
ERCC4-206ENST00000574781 SHROOM4Q9ULL8 1493 aa16.11■□□□□ 0.17
ERCC4-206ENST00000574781 EIF4G1Q04637 1599 aaKnown RBP16.08■□□□□ 0.16
ERCC4-206ENST00000574781 PPP4R3CPQ6ZMV5 832 aa16.06■□□□□ 0.16
ERCC4-206ENST00000574781 CNKSR2Q8WXI2 1034 aa15.73■□□□□ 0.11
ERCC4-206ENST00000574781 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
ERCC4-206ENST00000574781 DNAJC5Q9H3Z4 198 aa15.62■□□□□ 0.09
ERCC4-206ENST00000574781 NCBP3Q53F19 620 aaKnown RBP15.61■□□□□ 0.09
ERCC4-206ENST00000574781 NCAPD3P42695 1498 aa15.56■□□□□ 0.08
ERCC4-206ENST00000574781 ATAD2BQ9ULI0 1458 aa15.52■□□□□ 0.08
ERCC4-206ENST00000574781 RNF216Q9NWF9 866 aaPredicted RBP15.51■□□□□ 0.07
ERCC4-206ENST00000574781 ERCC6Q03468 1493 aa15.5■□□□□ 0.07
ERCC4-206ENST00000574781 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
ERCC4-206ENST00000574781 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
ERCC4-206ENST00000574781 NESP48681 1621 aa15.41■□□□□ 0.06
ERCC4-206ENST00000574781 CUX2O14529 1486 aa15.4■□□□□ 0.06
ERCC4-206ENST00000574781 BAZ1BQ9UIG0 1483 aaKnown RBP15.37■□□□□ 0.05
ERCC4-206ENST00000574781 HMGXB3Q12766 1538 aa15.36■□□□□ 0.05
ERCC4-206ENST00000574781 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
ERCC4-206ENST00000574781 KCNA4P22459 653 aa15.34■□□□□ 0.05
ERCC4-206ENST00000574781 NPM3O75607 178 aaKnown RBP15.33■□□□□ 0.04
ERCC4-206ENST00000574781 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
ERCC4-206ENST00000574781 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
ERCC4-206ENST00000574781 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.19■□□□□ 0.02
ERCC4-206ENST00000574781 LAMC3Q9Y6N6 1575 aa15.17■□□□□ 0.02
ERCC4-206ENST00000574781 PDS5BQ9NTI5 1447 aa15.17■□□□□ 0.02
ERCC4-206ENST00000574781 CADPSQ9ULU8 1353 aa15.13■□□□□ 0.01
ERCC4-206ENST00000574781 THOC2Q8NI27 1593 aaKnown RBP15.13■□□□□ 0.01
ERCC4-206ENST00000574781 WIZO95785 1651 aa15.1■□□□□ 0.01
ERCC4-206ENST00000574781 KIF21AQ7Z4S6 1674 aa15.1■□□□□ 0.01
ERCC4-206ENST00000574781 TRIM41Q8WV44 630 aa15.02■□□□□ -0
ERCC4-206ENST00000574781 MRC2Q9UBG0 1479 aa15.01□□□□□ -0.01
ERCC4-206ENST00000574781 RSF1Q96T23 1441 aaPredicted RBP14.98□□□□□ -0.01
ERCC4-206ENST00000574781 DSG3P32926 999 aa14.96□□□□□ -0.01
ERCC4-206ENST00000574781 FANCD2Q9BXW9 1451 aa14.95□□□□□ -0.02
ERCC4-206ENST00000574781 CEP164Q9UPV0 1460 aa14.94□□□□□ -0.02
ERCC4-206ENST00000574781 CAPN15O75808 1086 aa14.93□□□□□ -0.02
ERCC4-206ENST00000574781 WDR62O43379 1518 aa14.92□□□□□ -0.02
ERCC4-206ENST00000574781 CFTRP13569 1480 aa14.9□□□□□ -0.02
ERCC4-206ENST00000574781 OSCARQ8IYS5 282 aa14.85□□□□□ -0.03
ERCC4-206ENST00000574781 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
ERCC4-206ENST00000574781 URB2Q14146 1524 aaKnown RBP14.82□□□□□ -0.04
ERCC4-206ENST00000574781 CCDC88BA6NC98 1476 aa14.78□□□□□ -0.04
ERCC4-206ENST00000574781 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
ERCC4-206ENST00000574781 ZNF608Q9ULD9 1512 aaPredicted RBP14.68□□□□□ -0.06
ERCC4-206ENST00000574781 IFT140Q96RY7 1462 aa14.63□□□□□ -0.07
ERCC4-206ENST00000574781 TOPBP1Q92547 1522 aa14.63□□□□□ -0.07
ERCC4-206ENST00000574781 FBLN2P98095 1184 aa14.61□□□□□ -0.07
ERCC4-206ENST00000574781 SP7Q8TDD2 431 aaPredicted RBP14.61□□□□□ -0.07
ERCC4-206ENST00000574781 PRDM2Q13029 1718 aa14.58□□□□□ -0.07
ERCC4-206ENST00000574781 AQRO60306 1485 aaKnown RBP eCLIP14.58□□□□□ -0.08
ERCC4-206ENST00000574781 SLC4A1APQ9BWU0 796 aaKnown RBP14.58□□□□□ -0.08
ERCC4-206ENST00000574781 U3KPZ7 1027 aaPredicted RBP14.58□□□□□ -0.08
ERCC4-206ENST00000574781 CYB5RLQ6IPT4 315 aa14.57□□□□□ -0.08
ERCC4-206ENST00000574781 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
ERCC4-206ENST00000574781 SLC4A2P04920 1241 aa14.55□□□□□ -0.08
ERCC4-206ENST00000574781 RIMBP3CA6NJZ7 1639 aa14.53□□□□□ -0.08
ERCC4-206ENST00000574781 RIMBP3BA6NNM3 1639 aa14.53□□□□□ -0.08
ERCC4-206ENST00000574781 RIMBP3Q9UFD9 1639 aa14.53□□□□□ -0.08
ERCC4-206ENST00000574781 DNMBPQ6XZF7 1577 aa14.52□□□□□ -0.08
ERCC4-206ENST00000574781 CHRDL2Q6WN34 429 aa14.52□□□□□ -0.09
ERCC4-206ENST00000574781 TDRD9Q8NDG6 1382 aaKnown RBP14.51□□□□□ -0.09
ERCC4-206ENST00000574781 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
ERCC4-206ENST00000574781 EIF4G3O43432 1585 aaKnown RBP14.5□□□□□ -0.09
ERCC4-206ENST00000574781 ARHGEF11O15085 1522 aa14.49□□□□□ -0.09
ERCC4-206ENST00000574781 POLA1P09884 1462 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms