RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 NISCHQ9Y2I1 1504 aa25.32■■□□□ 1.64
CIITA-209ENST00000573309 DCAF8L2P0C7V8 631 aa22.26■■□□□ 1.15
CIITA-209ENST00000573309 SHROOM4Q9ULL8 1493 aa22.02■■□□□ 1.11
CIITA-209ENST00000573309 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
CIITA-209ENST00000573309 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
CIITA-209ENST00000573309 ABCC9O60706 1549 aa21.22■□□□□ 0.99
CIITA-209ENST00000573309 ZCCHC6Q5VYS8 1495 aaKnown RBP21.21■□□□□ 0.99
CIITA-209ENST00000573309 SCRIBQ14160 1630 aa20.59■□□□□ 0.89
CIITA-209ENST00000573309 PABPN1Q86U42 306 aaKnown RBP eCLIP20.44■□□□□ 0.86
CIITA-209ENST00000573309 DCAF1Q9Y4B6 1507 aa20.38■□□□□ 0.85
CIITA-209ENST00000573309 HRCP23327 699 aa20.18■□□□□ 0.82
CIITA-209ENST00000573309 NACADO15069 1562 aa20.13■□□□□ 0.81
CIITA-209ENST00000573309 CECR2Q9BXF3 1484 aa20.1■□□□□ 0.81
CIITA-209ENST00000573309 EHMT2Q96KQ7 1210 aa20.06■□□□□ 0.8
CIITA-209ENST00000573309 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
CIITA-209ENST00000573309 CHIC1Q5VXU3 224 aa20.04■□□□□ 0.8
CIITA-209ENST00000573309 RSF1Q96T23 1441 aaPredicted RBP19.97■□□□□ 0.79
CIITA-209ENST00000573309 MYO15BQ96JP2 1530 aa19.93■□□□□ 0.78
CIITA-209ENST00000573309 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
CIITA-209ENST00000573309 PPARGC1BQ86YN6 1023 aaKnown RBP19.86■□□□□ 0.77
CIITA-209ENST00000573309 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.76
CIITA-209ENST00000573309 PCGF6Q9BYE7 350 aa19.83■□□□□ 0.76
CIITA-209ENST00000573309 LOC105371045A0A1W2PR82 267 aa19.76■□□□□ 0.75
CIITA-209ENST00000573309 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
CIITA-209ENST00000573309 WIZO95785 1651 aa19.66■□□□□ 0.74
CIITA-209ENST00000573309 UNC13AQ9UPW8 1703 aa19.61■□□□□ 0.73
CIITA-209ENST00000573309 BICRAQ9NZM4 1560 aa19.52■□□□□ 0.72
CIITA-209ENST00000573309 BAZ1AQ9NRL2 1556 aaPredicted RBP19.44■□□□□ 0.7
CIITA-209ENST00000573309 SMARCA4P51532 1647 aa19.36■□□□□ 0.69
CIITA-209ENST00000573309 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
CIITA-209ENST00000573309 PELP1Q8IZL8 1130 aaKnown RBP19.24■□□□□ 0.67
CIITA-209ENST00000573309 ABCC8Q09428 1581 aa19.18■□□□□ 0.66
CIITA-209ENST00000573309 RANGAP1P46060 587 aaPredicted RBP19.18■□□□□ 0.66
CIITA-209ENST00000573309 TTBK1Q5TCY1 1321 aaPredicted RBP19.16■□□□□ 0.66
CIITA-209ENST00000573309 ATAD2BQ9ULI0 1458 aa19.15■□□□□ 0.66
CIITA-209ENST00000573309 TRIM26Q12899 539 aaPredicted RBP19.15■□□□□ 0.66
CIITA-209ENST00000573309 BAZ1BQ9UIG0 1483 aaKnown RBP19.14■□□□□ 0.65
CIITA-209ENST00000573309 TOP2AP11388 1531 aaKnown RBP19.13■□□□□ 0.65
CIITA-209ENST00000573309 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
CIITA-209ENST00000573309 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
CIITA-209ENST00000573309 SMARCA2P51531 1590 aa19.08■□□□□ 0.64
CIITA-209ENST00000573309 EIF4G1Q04637 1599 aaKnown RBP19.01■□□□□ 0.63
CIITA-209ENST00000573309 UBTFP17480 764 aaKnown RBP18.96■□□□□ 0.63
CIITA-209ENST00000573309 SOGA1O94964 1423 aa18.94■□□□□ 0.62
CIITA-209ENST00000573309 RUSC2Q8N2Y8 1516 aa18.9■□□□□ 0.62
CIITA-209ENST00000573309 ZEB1P37275 1124 aaPredicted RBP18.9■□□□□ 0.62
CIITA-209ENST00000573309 WRNQ14191 1432 aaPredicted RBP eCLIP18.83■□□□□ 0.6
CIITA-209ENST00000573309 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
CIITA-209ENST00000573309 NCAPD3P42695 1498 aa18.75■□□□□ 0.59
CIITA-209ENST00000573309 CC2D2AQ9P2K1 1620 aa18.75■□□□□ 0.59
CIITA-209ENST00000573309 PEG3Q9GZU2 1588 aa18.74■□□□□ 0.59
CIITA-209ENST00000573309 SYNJ1O43426 1573 aa18.66■□□□□ 0.58
CIITA-209ENST00000573309 NESP48681 1621 aa18.65■□□□□ 0.58
CIITA-209ENST00000573309 NEUROD1Q13562 356 aa18.61■□□□□ 0.57
CIITA-209ENST00000573309 ACIN1Q9UKV3 1341 aaKnown RBP18.61■□□□□ 0.57
CIITA-209ENST00000573309 CADPSQ9ULU8 1353 aa18.55■□□□□ 0.56
CIITA-209ENST00000573309 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
CIITA-209ENST00000573309 CFTRP13569 1480 aa18.48■□□□□ 0.55
CIITA-209ENST00000573309 GTF3C3Q9Y5Q9 886 aa18.47■□□□□ 0.55
CIITA-209ENST00000573309 P3H3Q8IVL6 736 aa18.46■□□□□ 0.55
CIITA-209ENST00000573309 CEP162Q5TB80 1403 aa18.45■□□□□ 0.54
CIITA-209ENST00000573309 CUX1P39880 1505 aa18.44■□□□□ 0.54
CIITA-209ENST00000573309 ATP1B4Q9UN42 357 aaPredicted RBP18.43■□□□□ 0.54
CIITA-209ENST00000573309 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
CIITA-209ENST00000573309 MYT1Q01538 1121 aa18.41■□□□□ 0.54
CIITA-209ENST00000573309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.41■□□□□ 0.54
CIITA-209ENST00000573309 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.53
CIITA-209ENST00000573309 CUX2O14529 1486 aa18.36■□□□□ 0.53
CIITA-209ENST00000573309 RAD54L2Q9Y4B4 1467 aa18.36■□□□□ 0.53
CIITA-209ENST00000573309 GOLGA3Q08378 1498 aa18.33■□□□□ 0.52
CIITA-209ENST00000573309 DIEXFQ68CQ4 756 aaKnown RBP18.32■□□□□ 0.52
CIITA-209ENST00000573309 TDRD9Q8NDG6 1382 aaKnown RBP18.31■□□□□ 0.52
CIITA-209ENST00000573309 TNIKQ9UKE5 1360 aa18.31■□□□□ 0.52
CIITA-209ENST00000573309 CCER1Q8TC90 406 aaPredicted RBP18.31■□□□□ 0.52
CIITA-209ENST00000573309 APLP2Q06481 763 aa18.3■□□□□ 0.52
CIITA-209ENST00000573309 CENPBP07199 599 aaPredicted RBP18.29■□□□□ 0.52
CIITA-209ENST00000573309 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
CIITA-209ENST00000573309 FGD5Q6ZNL6 1462 aa18.29■□□□□ 0.52
CIITA-209ENST00000573309 EEA1Q15075 1411 aa18.27■□□□□ 0.52
CIITA-209ENST00000573309 KIF27Q86VH2 1401 aa18.27■□□□□ 0.52
CIITA-209ENST00000573309 HNRNPUL2Q1KMD3 747 aaKnown RBP18.27■□□□□ 0.52
CIITA-209ENST00000573309 CLIP1P30622 1438 aa18.27■□□□□ 0.51
CIITA-209ENST00000573309 CEP164Q9UPV0 1460 aa18.25■□□□□ 0.51
CIITA-209ENST00000573309 ARID3CA6NKF2 412 aa18.21■□□□□ 0.51
CIITA-209ENST00000573309 ITGAEP38570 1179 aa18.19■□□□□ 0.5
CIITA-209ENST00000573309 IGF1RP08069 1367 aa18.18■□□□□ 0.5
CIITA-209ENST00000573309 FBLN2P98095 1184 aa18.18■□□□□ 0.5
CIITA-209ENST00000573309 CARMIL1Q5VZK9 1371 aa18.16■□□□□ 0.5
CIITA-209ENST00000573309 TOPBP1Q92547 1522 aa18.13■□□□□ 0.49
CIITA-209ENST00000573309 PDS5BQ9NTI5 1447 aa18.12■□□□□ 0.49
CIITA-209ENST00000573309 POLA1P09884 1462 aaPredicted RBP18.12■□□□□ 0.49
CIITA-209ENST00000573309 URB2Q14146 1524 aaKnown RBP18.11■□□□□ 0.49
CIITA-209ENST00000573309 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
CIITA-209ENST00000573309 KANK4Q5T7N3 995 aaPredicted RBP18.1■□□□□ 0.49
CIITA-209ENST00000573309 ERCC6Q03468 1493 aa18.06■□□□□ 0.48
CIITA-209ENST00000573309 PRXQ9BXM0 1461 aa18.06■□□□□ 0.48
CIITA-209ENST00000573309 YTHDC1Q96MU7 727 aaKnown RBP18.05■□□□□ 0.48
CIITA-209ENST00000573309 AQRO60306 1485 aaKnown RBP eCLIP18.05■□□□□ 0.48
CIITA-209ENST00000573309 KIF21BO75037 1637 aa18■□□□□ 0.47
CIITA-209ENST00000573309 KIF21AQ7Z4S6 1674 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms