RNA–Protein interactions for RNA: ENST00000570606.5

SMG6-204, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-204ENST00000570606 AEBP2Q6ZN18 517 aaPredicted RBP18.47■□□□□ 0.55
SMG6-204ENST00000570606 CHIC1Q5VXU3 224 aa18.41■□□□□ 0.54
SMG6-204ENST00000570606 NISCHQ9Y2I1 1504 aa16.28■□□□□ 0.2
SMG6-204ENST00000570606 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
SMG6-204ENST00000570606 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
SMG6-204ENST00000570606 PLPPR3Q6T4P5 718 aa15.11■□□□□ 0.01
SMG6-204ENST00000570606 CCDC180Q9P1Z9 1646 aa14.7□□□□□ -0.06
SMG6-204ENST00000570606 ABCC9O60706 1549 aa14.66□□□□□ -0.06
SMG6-204ENST00000570606 FOXD1Q16676 465 aa14.41□□□□□ -0.1
SMG6-204ENST00000570606 PPP6R1Q9UPN7 881 aa14.21□□□□□ -0.13
SMG6-204ENST00000570606 ADRA2BP18089 450 aa14.19□□□□□ -0.14
SMG6-204ENST00000570606 RB1CC1Q8TDY2 1594 aa13.97□□□□□ -0.17
SMG6-204ENST00000570606 NACADO15069 1562 aa13.85□□□□□ -0.19
SMG6-204ENST00000570606 DCAF8L2P0C7V8 631 aa13.73□□□□□ -0.21
SMG6-204ENST00000570606 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
SMG6-204ENST00000570606 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
SMG6-204ENST00000570606 PIAS4Q8N2W9 510 aaPredicted RBP13.66□□□□□ -0.22
SMG6-204ENST00000570606 MYO15BQ96JP2 1530 aa13.62□□□□□ -0.23
SMG6-204ENST00000570606 PABPN1Q86U42 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
SMG6-204ENST00000570606 KCNA4P22459 653 aa13.54□□□□□ -0.24
SMG6-204ENST00000570606 BICRAQ9NZM4 1560 aa13.54□□□□□ -0.24
SMG6-204ENST00000570606 ZCCHC6Q5VYS8 1495 aaKnown RBP13.51□□□□□ -0.25
SMG6-204ENST00000570606 DCAF1Q9Y4B6 1507 aa13.44□□□□□ -0.26
SMG6-204ENST00000570606 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
SMG6-204ENST00000570606 SHROOM4Q9ULL8 1493 aa13.38□□□□□ -0.27
SMG6-204ENST00000570606 PPP4R3CPQ6ZMV5 832 aa13.37□□□□□ -0.27
SMG6-204ENST00000570606 CC2D2AQ9P2K1 1620 aa13.26□□□□□ -0.29
SMG6-204ENST00000570606 EIF4G1Q04637 1599 aaKnown RBP13.23□□□□□ -0.29
SMG6-204ENST00000570606 CECR2Q9BXF3 1484 aa13.21□□□□□ -0.3
SMG6-204ENST00000570606 MSH5O43196 834 aa13.1□□□□□ -0.31
SMG6-204ENST00000570606 NCBP3Q53F19 620 aaKnown RBP13.09□□□□□ -0.31
SMG6-204ENST00000570606 EHMT2Q96KQ7 1210 aa13.02□□□□□ -0.33
SMG6-204ENST00000570606 NPM3O75607 178 aaKnown RBP12.96□□□□□ -0.33
SMG6-204ENST00000570606 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
SMG6-204ENST00000570606 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
SMG6-204ENST00000570606 CNKSR2Q8WXI2 1034 aa12.9□□□□□ -0.34
SMG6-204ENST00000570606 MAPK8IP2Q13387 824 aaPredicted RBP12.76□□□□□ -0.37
SMG6-204ENST00000570606 SMARCA4P51532 1647 aa12.75□□□□□ -0.37
SMG6-204ENST00000570606 NCAPD3P42695 1498 aa12.74□□□□□ -0.37
SMG6-204ENST00000570606 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
SMG6-204ENST00000570606 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
SMG6-204ENST00000570606 ATAD2BQ9ULI0 1458 aa12.72□□□□□ -0.37
SMG6-204ENST00000570606 HMGXB3Q12766 1538 aa12.71□□□□□ -0.38
SMG6-204ENST00000570606 ERCC6Q03468 1493 aa12.71□□□□□ -0.38
SMG6-204ENST00000570606 BAZ1AQ9NRL2 1556 aaPredicted RBP12.67□□□□□ -0.38
SMG6-204ENST00000570606 CUX2O14529 1486 aa12.66□□□□□ -0.38
SMG6-204ENST00000570606 BAZ1BQ9UIG0 1483 aaKnown RBP12.64□□□□□ -0.39
SMG6-204ENST00000570606 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
SMG6-204ENST00000570606 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
SMG6-204ENST00000570606 NESP48681 1621 aa12.59□□□□□ -0.39
SMG6-204ENST00000570606 RNF216Q9NWF9 866 aaPredicted RBP12.56□□□□□ -0.4
SMG6-204ENST00000570606 MROH2BQ7Z745 1585 aa12.55□□□□□ -0.4
SMG6-204ENST00000570606 LAMC3Q9Y6N6 1575 aa12.52□□□□□ -0.41
SMG6-204ENST00000570606 ZBTB22O15209 634 aa12.51□□□□□ -0.41
SMG6-204ENST00000570606 THOC2Q8NI27 1593 aaKnown RBP12.51□□□□□ -0.41
SMG6-204ENST00000570606 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
SMG6-204ENST00000570606 KIF21AQ7Z4S6 1674 aa12.49□□□□□ -0.41
SMG6-204ENST00000570606 WIZO95785 1651 aa12.43□□□□□ -0.42
SMG6-204ENST00000570606 HOXD11P31277 338 aaPredicted RBP12.42□□□□□ -0.42
SMG6-204ENST00000570606 PDS5BQ9NTI5 1447 aa12.42□□□□□ -0.42
SMG6-204ENST00000570606 CADPSQ9ULU8 1353 aa12.35□□□□□ -0.43
SMG6-204ENST00000570606 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
SMG6-204ENST00000570606 FOXD4L1Q9NU39 408 aa12.33□□□□□ -0.44
SMG6-204ENST00000570606 WDR62O43379 1518 aa12.31□□□□□ -0.44
SMG6-204ENST00000570606 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
SMG6-204ENST00000570606 TOP2AP11388 1531 aaKnown RBP12.27□□□□□ -0.44
SMG6-204ENST00000570606 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
SMG6-204ENST00000570606 FANCD2Q9BXW9 1451 aa12.25□□□□□ -0.45
SMG6-204ENST00000570606 PRDM2Q13029 1718 aa12.23□□□□□ -0.45
SMG6-204ENST00000570606 CFTRP13569 1480 aa12.22□□□□□ -0.45
SMG6-204ENST00000570606 SLC4A2P04920 1241 aa12.16□□□□□ -0.46
SMG6-204ENST00000570606 URB2Q14146 1524 aaKnown RBP12.15□□□□□ -0.46
SMG6-204ENST00000570606 TRIM41Q8WV44 630 aa12.1□□□□□ -0.47
SMG6-204ENST00000570606 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.47
SMG6-204ENST00000570606 IFT140Q96RY7 1462 aa12.03□□□□□ -0.48
SMG6-204ENST00000570606 TOPBP1Q92547 1522 aa12.02□□□□□ -0.48
SMG6-204ENST00000570606 OSCARQ8IYS5 282 aa12.01□□□□□ -0.49
SMG6-204ENST00000570606 ZNF608Q9ULD9 1512 aaPredicted RBP12□□□□□ -0.49
SMG6-204ENST00000570606 DNMBPQ6XZF7 1577 aa12□□□□□ -0.49
SMG6-204ENST00000570606 EIF4G3O43432 1585 aaKnown RBP11.99□□□□□ -0.49
SMG6-204ENST00000570606 ABCC8Q09428 1581 aa11.98□□□□□ -0.49
SMG6-204ENST00000570606 MYCNP04198 464 aaPredicted RBP11.95□□□□□ -0.5
SMG6-204ENST00000570606 RIMBP3CA6NJZ7 1639 aa11.94□□□□□ -0.5
SMG6-204ENST00000570606 RIMBP3BA6NNM3 1639 aa11.94□□□□□ -0.5
SMG6-204ENST00000570606 RIMBP3Q9UFD9 1639 aa11.94□□□□□ -0.5
SMG6-204ENST00000570606 CHD1O14646 1710 aa11.93□□□□□ -0.5
SMG6-204ENST00000570606 TARBP1Q13395 1621 aaKnown RBP11.92□□□□□ -0.5
SMG6-204ENST00000570606 POLA1P09884 1462 aaPredicted RBP11.89□□□□□ -0.51
SMG6-204ENST00000570606 ARHGEF11O15085 1522 aa11.89□□□□□ -0.51
SMG6-204ENST00000570606 ATXN8OSP0DMR3 200 aa11.87□□□□□ -0.51
SMG6-204ENST00000570606 AQRO60306 1485 aaKnown RBP eCLIP11.87□□□□□ -0.513e-6■■■■□ 24
SMG6-204ENST00000570606 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
SMG6-204ENST00000570606 POTEDQ86YR6 584 aa11.86□□□□□ -0.51
SMG6-204ENST00000570606 RAD54L2Q9Y4B4 1467 aa11.83□□□□□ -0.52
SMG6-204ENST00000570606 WDR97A6NE52 1622 aa11.83□□□□□ -0.52
SMG6-204ENST00000570606 FGD5Q6ZNL6 1462 aa11.83□□□□□ -0.52
SMG6-204ENST00000570606 SOGA1O94964 1423 aa11.81□□□□□ -0.52
SMG6-204ENST00000570606 FBLN2P98095 1184 aa11.81□□□□□ -0.52
SMG6-204ENST00000570606 CUX1P39880 1505 aa11.81□□□□□ -0.52
SMG6-204ENST00000570606 SNAPC4Q5SXM2 1469 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms