RNA–Protein interactions for RNA: ENST00000570188.1

RBFOX1-220, Transcript of RNA binding fox-1 homolog 1, humanhuman

TSL 2

Gene RBFOX1, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX1-220ENST00000570188 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
RBFOX1-220ENST00000570188 AEBP2Q6ZN18 517 aaPredicted RBP25.58■■□□□ 1.69
RBFOX1-220ENST00000570188 PHF23Q9BUL5 403 aaPredicted RBP22.68■■□□□ 1.22
RBFOX1-220ENST00000570188 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
RBFOX1-220ENST00000570188 SENP3Q9H4L4 574 aaPredicted RBP21.5■■□□□ 1.03
RBFOX1-220ENST00000570188 PLPPR3Q6T4P5 718 aa21.12■□□□□ 0.97
RBFOX1-220ENST00000570188 FOXD1Q16676 465 aa19.92■□□□□ 0.78
RBFOX1-220ENST00000570188 ADRA2BP18089 450 aa19.85■□□□□ 0.77
RBFOX1-220ENST00000570188 PPP6R1Q9UPN7 881 aa19.76■□□□□ 0.75
RBFOX1-220ENST00000570188 CCDC180Q9P1Z9 1646 aa19.53■□□□□ 0.72
RBFOX1-220ENST00000570188 KCNA4P22459 653 aa19.18■□□□□ 0.66
RBFOX1-220ENST00000570188 PIAS4Q8N2W9 510 aaPredicted RBP18.95■□□□□ 0.62
RBFOX1-220ENST00000570188 PPP4R3CPQ6ZMV5 832 aa18.73■□□□□ 0.59
RBFOX1-220ENST00000570188 EHMT2Q96KQ7 1210 aa18.73■□□□□ 0.59
RBFOX1-220ENST00000570188 ZCCHC6Q5VYS8 1495 aaKnown RBP18.66■□□□□ 0.58
RBFOX1-220ENST00000570188 ABCC9O60706 1549 aa18.4■□□□□ 0.54
RBFOX1-220ENST00000570188 NCBP3Q53F19 620 aaKnown RBP18.39■□□□□ 0.53
RBFOX1-220ENST00000570188 DCAF1Q9Y4B6 1507 aa18.38■□□□□ 0.53
RBFOX1-220ENST00000570188 SLC4A1APQ9BWU0 796 aaKnown RBP18.36■□□□□ 0.53
RBFOX1-220ENST00000570188 DCAF8L2P0C7V8 631 aa18.26■□□□□ 0.51
RBFOX1-220ENST00000570188 NPM3O75607 178 aaKnown RBP18.21■□□□□ 0.51
RBFOX1-220ENST00000570188 MYO15BQ96JP2 1530 aa18.17■□□□□ 0.5
RBFOX1-220ENST00000570188 CSRNP3Q8WYN3 585 aa18.16■□□□□ 0.5
RBFOX1-220ENST00000570188 NACADO15069 1562 aa18.12■□□□□ 0.49
RBFOX1-220ENST00000570188 SHROOM4Q9ULL8 1493 aa18.02■□□□□ 0.48
RBFOX1-220ENST00000570188 CNKSR2Q8WXI2 1034 aa18.02■□□□□ 0.48
RBFOX1-220ENST00000570188 MSH5O43196 834 aa18.01■□□□□ 0.47
RBFOX1-220ENST00000570188 RB1CC1Q8TDY2 1594 aa18■□□□□ 0.47
RBFOX1-220ENST00000570188 SCAF1Q9H7N4 1312 aaKnown RBP17.98■□□□□ 0.47
RBFOX1-220ENST00000570188 SCRIBQ14160 1630 aa17.9■□□□□ 0.46
RBFOX1-220ENST00000570188 UNC13AQ9UPW8 1703 aa17.75■□□□□ 0.43
RBFOX1-220ENST00000570188 MAPK8IP2Q13387 824 aaPredicted RBP17.73■□□□□ 0.43
RBFOX1-220ENST00000570188 ZBTB22O15209 634 aa17.7■□□□□ 0.42
RBFOX1-220ENST00000570188 DNAJC5BQ9UF47 199 aa17.51■□□□□ 0.39
RBFOX1-220ENST00000570188 RNF216Q9NWF9 866 aaPredicted RBP17.48■□□□□ 0.39
RBFOX1-220ENST00000570188 BICRAQ9NZM4 1560 aa17.44■□□□□ 0.38
RBFOX1-220ENST00000570188 FOXD4L1Q9NU39 408 aa17.41■□□□□ 0.38
RBFOX1-220ENST00000570188 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
RBFOX1-220ENST00000570188 SUPT5HO00267 1087 aaKnown RBP17.26■□□□□ 0.35
RBFOX1-220ENST00000570188 PABPN1Q86U42 306 aaKnown RBP eCLIP17.25■□□□□ 0.35
RBFOX1-220ENST00000570188 HOXD11P31277 338 aaPredicted RBP17.23■□□□□ 0.35
RBFOX1-220ENST00000570188 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
RBFOX1-220ENST00000570188 BAZ1AQ9NRL2 1556 aaPredicted RBP17.19■□□□□ 0.34
RBFOX1-220ENST00000570188 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
RBFOX1-220ENST00000570188 RSF1Q96T23 1441 aaPredicted RBP17.15■□□□□ 0.34
RBFOX1-220ENST00000570188 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
RBFOX1-220ENST00000570188 WIZO95785 1651 aa17.07■□□□□ 0.32
RBFOX1-220ENST00000570188 SLC4A2P04920 1241 aa17.03■□□□□ 0.32
RBFOX1-220ENST00000570188 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
RBFOX1-220ENST00000570188 PEG3Q9GZU2 1588 aa16.91■□□□□ 0.3
RBFOX1-220ENST00000570188 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
RBFOX1-220ENST00000570188 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
RBFOX1-220ENST00000570188 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
RBFOX1-220ENST00000570188 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
RBFOX1-220ENST00000570188 BAZ1BQ9UIG0 1483 aaKnown RBP16.74■□□□□ 0.27
RBFOX1-220ENST00000570188 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
RBFOX1-220ENST00000570188 CC2D2AQ9P2K1 1620 aa16.7■□□□□ 0.26
RBFOX1-220ENST00000570188 ATXN8OSP0DMR3 200 aa16.68■□□□□ 0.26
RBFOX1-220ENST00000570188 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
RBFOX1-220ENST00000570188 CCDC88BA6NC98 1476 aa16.63■□□□□ 0.25
RBFOX1-220ENST00000570188 DCAF8L1A6NGE4 600 aa16.51■□□□□ 0.23
RBFOX1-220ENST00000570188 PRDM2Q13029 1718 aa16.42■□□□□ 0.22
RBFOX1-220ENST00000570188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.41■□□□□ 0.22
RBFOX1-220ENST00000570188 FKBP8Q14318 412 aa16.36■□□□□ 0.21
RBFOX1-220ENST00000570188 ATF5Q9Y2D1 282 aaPredicted RBP16.34■□□□□ 0.21
RBFOX1-220ENST00000570188 ABCC8Q09428 1581 aa16.31■□□□□ 0.2
RBFOX1-220ENST00000570188 U3KPZ7 1027 aaPredicted RBP16.28■□□□□ 0.2
RBFOX1-220ENST00000570188 CFTRP13569 1480 aa16.28■□□□□ 0.2
RBFOX1-220ENST00000570188 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
RBFOX1-220ENST00000570188 SAMD1Q6SPF0 538 aaPredicted RBP16.23■□□□□ 0.19
RBFOX1-220ENST00000570188 RTN4Q9NQC3 1192 aaKnown RBP16.23■□□□□ 0.19
RBFOX1-220ENST00000570188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.22■□□□□ 0.19
RBFOX1-220ENST00000570188 HNRNPUL2Q1KMD3 747 aaKnown RBP16.22■□□□□ 0.19
RBFOX1-220ENST00000570188 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
RBFOX1-220ENST00000570188 LAMC3Q9Y6N6 1575 aa16.18■□□□□ 0.18
RBFOX1-220ENST00000570188 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
RBFOX1-220ENST00000570188 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
RBFOX1-220ENST00000570188 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
RBFOX1-220ENST00000570188 BIVM-ERCC5R4GMW8 1640 aa16.15■□□□□ 0.18
RBFOX1-220ENST00000570188 NESP48681 1621 aa16.12■□□□□ 0.17
RBFOX1-220ENST00000570188 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
RBFOX1-220ENST00000570188 FANCD2Q9BXW9 1451 aa16.07■□□□□ 0.16
RBFOX1-220ENST00000570188 KIF21AQ7Z4S6 1674 aa16.07■□□□□ 0.16
RBFOX1-220ENST00000570188 CUX1P39880 1505 aa16.06■□□□□ 0.16
RBFOX1-220ENST00000570188 CEP164Q9UPV0 1460 aa16.01■□□□□ 0.15
RBFOX1-220ENST00000570188 DNMBPQ6XZF7 1577 aa15.98■□□□□ 0.15
RBFOX1-220ENST00000570188 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
RBFOX1-220ENST00000570188 FAM9AQ8IZU1 332 aaPredicted RBP15.94■□□□□ 0.14
RBFOX1-220ENST00000570188 ZNF219Q9P2Y4 722 aaPredicted RBP15.93■□□□□ 0.14
RBFOX1-220ENST00000570188 SOGA1O94964 1423 aa15.92■□□□□ 0.14
RBFOX1-220ENST00000570188 EEA1Q15075 1411 aa15.92■□□□□ 0.14
RBFOX1-220ENST00000570188 TOPBP1Q92547 1522 aa15.91■□□□□ 0.14
RBFOX1-220ENST00000570188 FGD5Q6ZNL6 1462 aa15.89■□□□□ 0.13
RBFOX1-220ENST00000570188 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
RBFOX1-220ENST00000570188 RUSC2Q8N2Y8 1516 aa15.88■□□□□ 0.13
RBFOX1-220ENST00000570188 APLP2Q06481 763 aa15.87■□□□□ 0.13
RBFOX1-220ENST00000570188 SLC24A1O60721 1099 aa15.84■□□□□ 0.13
RBFOX1-220ENST00000570188 MRC2Q9UBG0 1479 aa15.84■□□□□ 0.13
RBFOX1-220ENST00000570188 WDR97A6NE52 1622 aa15.83■□□□□ 0.12
RBFOX1-220ENST00000570188 LOC105371045A0A1W2PR82 267 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms