RNA–Protein interactions for RNA: ENST00000567258.1

LINC00564-201, long intergenic non-protein coding RNA 564, humanhuman

BASIC

Gene LINC00564, Length 1,119 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00564-201ENST00000567258 AEBP2Q6ZN18 517 aaPredicted RBP32.22■■■□□ 2.75
LINC00564-201ENST00000567258 CHIC1Q5VXU3 224 aa30.25■■■□□ 2.43
LINC00564-201ENST00000567258 SENP3Q9H4L4 574 aaPredicted RBP27.52■■■□□ 2
LINC00564-201ENST00000567258 PHF23Q9BUL5 403 aaPredicted RBP27.14■■□□□ 1.94
LINC00564-201ENST00000567258 FOXD1Q16676 465 aa25.7■■□□□ 1.7
LINC00564-201ENST00000567258 NISCHQ9Y2I1 1504 aa25.45■■□□□ 1.66
LINC00564-201ENST00000567258 POTEDQ86YR6 584 aa24.26■■□□□ 1.47
LINC00564-201ENST00000567258 MSH5O43196 834 aa24.17■■□□□ 1.46
LINC00564-201ENST00000567258 PLPPR3Q6T4P5 718 aa24.02■■□□□ 1.44
LINC00564-201ENST00000567258 PIAS4Q8N2W9 510 aaPredicted RBP23.94■■□□□ 1.42
LINC00564-201ENST00000567258 PPP6R1Q9UPN7 881 aa23.79■■□□□ 1.4
LINC00564-201ENST00000567258 ADRA2BP18089 450 aa23.7■■□□□ 1.38
LINC00564-201ENST00000567258 CCDC180Q9P1Z9 1646 aa22.85■■□□□ 1.25
LINC00564-201ENST00000567258 ABCC9O60706 1549 aa22.62■■□□□ 1.21
LINC00564-201ENST00000567258 MAPK8IP2Q13387 824 aaPredicted RBP21.88■■□□□ 1.09
LINC00564-201ENST00000567258 DMRT2Q9Y5R5 561 aa21.77■■□□□ 1.08
LINC00564-201ENST00000567258 RB1CC1Q8TDY2 1594 aa21.67■■□□□ 1.06
LINC00564-201ENST00000567258 SCAF1Q9H7N4 1312 aaKnown RBP21.65■■□□□ 1.06
LINC00564-201ENST00000567258 NACADO15069 1562 aa21.53■■□□□ 1.04
LINC00564-201ENST00000567258 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
LINC00564-201ENST00000567258 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
LINC00564-201ENST00000567258 UNC13AQ9UPW8 1703 aa21.19■□□□□ 0.98
LINC00564-201ENST00000567258 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
LINC00564-201ENST00000567258 PABPN1Q86U42 306 aaKnown RBP eCLIP21.07■□□□□ 0.96
LINC00564-201ENST00000567258 DCAF1Q9Y4B6 1507 aa21.04■□□□□ 0.96
LINC00564-201ENST00000567258 PPP4R3CPQ6ZMV5 832 aa21.02■□□□□ 0.96
LINC00564-201ENST00000567258 CACNB1Q02641 598 aaPredicted RBP20.99■□□□□ 0.95
LINC00564-201ENST00000567258 DCAF8L1A6NGE4 600 aa20.95■□□□□ 0.94
LINC00564-201ENST00000567258 DNAJC5BQ9UF47 199 aa20.95■□□□□ 0.94
LINC00564-201ENST00000567258 BICRAQ9NZM4 1560 aa20.91■□□□□ 0.94
LINC00564-201ENST00000567258 HOXD11P31277 338 aaPredicted RBP20.82■□□□□ 0.92
LINC00564-201ENST00000567258 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
LINC00564-201ENST00000567258 SHROOM4Q9ULL8 1493 aa20.73■□□□□ 0.91
LINC00564-201ENST00000567258 CNKSR2Q8WXI2 1034 aa20.69■□□□□ 0.9
LINC00564-201ENST00000567258 RNF39Q9H2S5 420 aa20.6■□□□□ 0.89
LINC00564-201ENST00000567258 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.89
LINC00564-201ENST00000567258 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
LINC00564-201ENST00000567258 EIF4G1Q04637 1599 aaKnown RBP20.44■□□□□ 0.86
LINC00564-201ENST00000567258 CECR2Q9BXF3 1484 aa20.37■□□□□ 0.85
LINC00564-201ENST00000567258 C1QBPQ07021 282 aaKnown RBP20.28■□□□□ 0.84
LINC00564-201ENST00000567258 NCBP3Q53F19 620 aaKnown RBP20.09■□□□□ 0.81
LINC00564-201ENST00000567258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.89■□□□□ 0.77
LINC00564-201ENST00000567258 SMARCA4P51532 1647 aa19.85■□□□□ 0.77
LINC00564-201ENST00000567258 NCAPD3P42695 1498 aa19.81■□□□□ 0.76
LINC00564-201ENST00000567258 NPM3O75607 178 aaKnown RBP19.81■□□□□ 0.76
LINC00564-201ENST00000567258 SMARCA2P51531 1590 aa19.81■□□□□ 0.76
LINC00564-201ENST00000567258 BAZ1AQ9NRL2 1556 aaPredicted RBP19.8■□□□□ 0.76
LINC00564-201ENST00000567258 ATAD2BQ9ULI0 1458 aa19.78■□□□□ 0.76
LINC00564-201ENST00000567258 HMGXB3Q12766 1538 aa19.72■□□□□ 0.75
LINC00564-201ENST00000567258 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
LINC00564-201ENST00000567258 PEG3Q9GZU2 1588 aa19.62■□□□□ 0.73
LINC00564-201ENST00000567258 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
LINC00564-201ENST00000567258 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
LINC00564-201ENST00000567258 CUX2O14529 1486 aa19.45■□□□□ 0.7
LINC00564-201ENST00000567258 NESP48681 1621 aa19.44■□□□□ 0.7
LINC00564-201ENST00000567258 WIZO95785 1651 aa19.43■□□□□ 0.7
LINC00564-201ENST00000567258 LAMC3Q9Y6N6 1575 aa19.42■□□□□ 0.7
LINC00564-201ENST00000567258 U3KPZ7 1027 aaPredicted RBP19.4■□□□□ 0.7
LINC00564-201ENST00000567258 PDS5BQ9NTI5 1447 aa19.3■□□□□ 0.68
LINC00564-201ENST00000567258 KIF21AQ7Z4S6 1674 aa19.3■□□□□ 0.68
LINC00564-201ENST00000567258 CADPSQ9ULU8 1353 aa19.25■□□□□ 0.67
LINC00564-201ENST00000567258 SPINK5Q9NQ38 1064 aaPredicted RBP19.25■□□□□ 0.67
LINC00564-201ENST00000567258 CAPN15O75808 1086 aa19.24■□□□□ 0.67
LINC00564-201ENST00000567258 RSF1Q96T23 1441 aaPredicted RBP19.24■□□□□ 0.67
LINC00564-201ENST00000567258 THOC2Q8NI27 1593 aaKnown RBP19.23■□□□□ 0.67
LINC00564-201ENST00000567258 DNAJC5Q9H3Z4 198 aa19.2■□□□□ 0.66
LINC00564-201ENST00000567258 DSG3P32926 999 aa19.19■□□□□ 0.66
LINC00564-201ENST00000567258 TOP2AP11388 1531 aaKnown RBP19.18■□□□□ 0.66
LINC00564-201ENST00000567258 KCNA4P22459 653 aa19.14■□□□□ 0.65
LINC00564-201ENST00000567258 MRC2Q9UBG0 1479 aa19.09■□□□□ 0.65
LINC00564-201ENST00000567258 CEP164Q9UPV0 1460 aa19.08■□□□□ 0.64
LINC00564-201ENST00000567258 CFTRP13569 1480 aa19.04■□□□□ 0.64
LINC00564-201ENST00000567258 FANCD2Q9BXW9 1451 aa19.04■□□□□ 0.64
LINC00564-201ENST00000567258 PRDM2Q13029 1718 aa19.03■□□□□ 0.64
LINC00564-201ENST00000567258 WDR62O43379 1518 aa19.01■□□□□ 0.63
LINC00564-201ENST00000567258 SLC4A2P04920 1241 aa19.01■□□□□ 0.63
LINC00564-201ENST00000567258 CCDC88BA6NC98 1476 aa18.93■□□□□ 0.62
LINC00564-201ENST00000567258 POTEHQ6S545 545 aa18.9■□□□□ 0.62
LINC00564-201ENST00000567258 TRHP20396 242 aaPredicted RBP18.86■□□□□ 0.61
LINC00564-201ENST00000567258 URB2Q14146 1524 aaKnown RBP18.84■□□□□ 0.61
LINC00564-201ENST00000567258 APLP2Q06481 763 aa18.81■□□□□ 0.6
LINC00564-201ENST00000567258 ABCB7O75027 752 aa18.77■□□□□ 0.6
LINC00564-201ENST00000567258 ZNF219Q9P2Y4 722 aaPredicted RBP18.77■□□□□ 0.6
LINC00564-201ENST00000567258 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
LINC00564-201ENST00000567258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.73■□□□□ 0.59
LINC00564-201ENST00000567258 HNRNPUL2Q1KMD3 747 aaKnown RBP18.73■□□□□ 0.59
LINC00564-201ENST00000567258 TOPBP1Q92547 1522 aa18.69■□□□□ 0.58
LINC00564-201ENST00000567258 IFT140Q96RY7 1462 aa18.67■□□□□ 0.58
LINC00564-201ENST00000567258 DNMBPQ6XZF7 1577 aa18.67■□□□□ 0.58
LINC00564-201ENST00000567258 SUPT5HO00267 1087 aaKnown RBP18.63■□□□□ 0.57
LINC00564-201ENST00000567258 OSCARQ8IYS5 282 aa18.62■□□□□ 0.57
LINC00564-201ENST00000567258 SAMD1Q6SPF0 538 aaPredicted RBP18.61■□□□□ 0.57
LINC00564-201ENST00000567258 ZNF608Q9ULD9 1512 aaPredicted RBP18.57■□□□□ 0.56
LINC00564-201ENST00000567258 EIF4G3O43432 1585 aaKnown RBP18.54■□□□□ 0.56
LINC00564-201ENST00000567258 TRIM41Q8WV44 630 aa18.51■□□□□ 0.55
LINC00564-201ENST00000567258 TARBP1Q13395 1621 aaKnown RBP18.5■□□□□ 0.55
LINC00564-201ENST00000567258 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
LINC00564-201ENST00000567258 SOGA1O94964 1423 aa18.46■□□□□ 0.55
LINC00564-201ENST00000567258 AQRO60306 1485 aaKnown RBP eCLIP18.45■□□□□ 0.54
LINC00564-201ENST00000567258 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms