RNA–Protein interactions for RNA: ENST00000561643.5

NEIL1-202, Transcript of nei like DNA glycosylase 1, humanhuman

TSL 5

Gene NEIL1, Length 3,271 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL1-202ENST00000561643 NISCHQ9Y2I1 1504 aa22.63■■□□□ 1.21
NEIL1-202ENST00000561643 SHROOM4Q9ULL8 1493 aa19.34■□□□□ 0.69
NEIL1-202ENST00000561643 CCDC180Q9P1Z9 1646 aa19.23■□□□□ 0.67
NEIL1-202ENST00000561643 ZCCHC6Q5VYS8 1495 aaKnown RBP19.14■□□□□ 0.65
NEIL1-202ENST00000561643 SUPT5HO00267 1087 aaKnown RBP18.98■□□□□ 0.63
NEIL1-202ENST00000561643 DCAF8L2P0C7V8 631 aa18.86■□□□□ 0.61
NEIL1-202ENST00000561643 DCAF1Q9Y4B6 1507 aa18.56■□□□□ 0.56
NEIL1-202ENST00000561643 CHIC1Q5VXU3 224 aa18.41■□□□□ 0.54
NEIL1-202ENST00000561643 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
NEIL1-202ENST00000561643 ABCC9O60706 1549 aa18.2■□□□□ 0.5
NEIL1-202ENST00000561643 SCRIBQ14160 1630 aa18.05■□□□□ 0.48
NEIL1-202ENST00000561643 HRCP23327 699 aa17.96■□□□□ 0.46
NEIL1-202ENST00000561643 RSF1Q96T23 1441 aaPredicted RBP17.91■□□□□ 0.46
NEIL1-202ENST00000561643 LOC105371045A0A1W2PR82 267 aa17.87■□□□□ 0.45
NEIL1-202ENST00000561643 PCGF6Q9BYE7 350 aa17.86■□□□□ 0.45
NEIL1-202ENST00000561643 NACADO15069 1562 aa17.81■□□□□ 0.44
NEIL1-202ENST00000561643 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
NEIL1-202ENST00000561643 PPARGC1BQ86YN6 1023 aaKnown RBP17.71■□□□□ 0.42
NEIL1-202ENST00000561643 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
NEIL1-202ENST00000561643 CECR2Q9BXF3 1484 aa17.65■□□□□ 0.42
NEIL1-202ENST00000561643 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
NEIL1-202ENST00000561643 PELP1Q8IZL8 1130 aaKnown RBP17.58■□□□□ 0.41
NEIL1-202ENST00000561643 FAM9AQ8IZU1 332 aaPredicted RBP17.54■□□□□ 0.4
NEIL1-202ENST00000561643 TRIM26Q12899 539 aaPredicted RBP17.52■□□□□ 0.4
NEIL1-202ENST00000561643 WIZO95785 1651 aa17.49■□□□□ 0.39
NEIL1-202ENST00000561643 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
NEIL1-202ENST00000561643 BAZ1AQ9NRL2 1556 aaPredicted RBP17.4■□□□□ 0.38
NEIL1-202ENST00000561643 PABPN1Q86U42 306 aaKnown RBP eCLIP17.38■□□□□ 0.37
NEIL1-202ENST00000561643 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
NEIL1-202ENST00000561643 TOP2AP11388 1531 aaKnown RBP17.23■□□□□ 0.35
NEIL1-202ENST00000561643 EIF4G1Q04637 1599 aaKnown RBP17.22■□□□□ 0.35
NEIL1-202ENST00000561643 UNC13AQ9UPW8 1703 aa17.2■□□□□ 0.34
NEIL1-202ENST00000561643 SCAF1Q9H7N4 1312 aaKnown RBP17.17■□□□□ 0.34
NEIL1-202ENST00000561643 CCDC88BA6NC98 1476 aa17.16■□□□□ 0.34
NEIL1-202ENST00000561643 ZEB1P37275 1124 aaPredicted RBP17.15■□□□□ 0.34
NEIL1-202ENST00000561643 SMARCA2P51531 1590 aa17.13■□□□□ 0.33
NEIL1-202ENST00000561643 ABCC8Q09428 1581 aa17.11■□□□□ 0.33
NEIL1-202ENST00000561643 BICRAQ9NZM4 1560 aa17.01■□□□□ 0.31
NEIL1-202ENST00000561643 MYT1Q01538 1121 aa16.99■□□□□ 0.31
NEIL1-202ENST00000561643 SOGA1O94964 1423 aa16.96■□□□□ 0.31
NEIL1-202ENST00000561643 EEA1Q15075 1411 aa16.9■□□□□ 0.3
NEIL1-202ENST00000561643 CEP162Q5TB80 1403 aa16.9■□□□□ 0.3
NEIL1-202ENST00000561643 CSRNP3Q8WYN3 585 aa16.9■□□□□ 0.3
NEIL1-202ENST00000561643 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.29
NEIL1-202ENST00000561643 TNIKQ9UKE5 1360 aa16.87■□□□□ 0.29
NEIL1-202ENST00000561643 UBTFP17480 764 aaKnown RBP16.87■□□□□ 0.29
NEIL1-202ENST00000561643 RUSC2Q8N2Y8 1516 aa16.86■□□□□ 0.29
NEIL1-202ENST00000561643 WRNQ14191 1432 aaPredicted RBP eCLIP16.86■□□□□ 0.29
NEIL1-202ENST00000561643 TTBK1Q5TCY1 1321 aaPredicted RBP16.84■□□□□ 0.29
NEIL1-202ENST00000561643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.83■□□□□ 0.28
NEIL1-202ENST00000561643 CCER1Q8TC90 406 aaPredicted RBP16.81■□□□□ 0.28
NEIL1-202ENST00000561643 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
NEIL1-202ENST00000561643 BAZ1BQ9UIG0 1483 aaKnown RBP16.79■□□□□ 0.28
NEIL1-202ENST00000561643 GOLGA3Q08378 1498 aa16.78■□□□□ 0.28
NEIL1-202ENST00000561643 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
NEIL1-202ENST00000561643 CEP164Q9UPV0 1460 aa16.69■□□□□ 0.26
NEIL1-202ENST00000561643 ACIN1Q9UKV3 1341 aaKnown RBP16.63■□□□□ 0.25
NEIL1-202ENST00000561643 KIF21BO75037 1637 aa16.63■□□□□ 0.25
NEIL1-202ENST00000561643 NEUROD1Q13562 356 aa16.62■□□□□ 0.25
NEIL1-202ENST00000561643 CLIP1P30622 1438 aa16.6■□□□□ 0.25
NEIL1-202ENST00000561643 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
NEIL1-202ENST00000561643 RAPGEF2Q9Y4G8 1499 aa16.55■□□□□ 0.24
NEIL1-202ENST00000561643 RANGAP1P46060 587 aaPredicted RBP16.53■□□□□ 0.24
NEIL1-202ENST00000561643 TOP2BQ02880 1626 aa16.53■□□□□ 0.24
NEIL1-202ENST00000561643 APLP2Q06481 763 aa16.52■□□□□ 0.23
NEIL1-202ENST00000561643 VPS8Q8N3P4 1428 aa16.51■□□□□ 0.23
NEIL1-202ENST00000561643 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
NEIL1-202ENST00000561643 HMGXB3Q12766 1538 aa16.47■□□□□ 0.23
NEIL1-202ENST00000561643 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
NEIL1-202ENST00000561643 BIVM-ERCC5R4GMW8 1640 aa16.46■□□□□ 0.23
NEIL1-202ENST00000561643 DIEXFQ68CQ4 756 aaKnown RBP16.45■□□□□ 0.22
NEIL1-202ENST00000561643 CUX1P39880 1505 aa16.38■□□□□ 0.21
NEIL1-202ENST00000561643 PRXQ9BXM0 1461 aa16.38■□□□□ 0.21
NEIL1-202ENST00000561643 ERICH3Q5RHP9 1530 aa16.38■□□□□ 0.21
NEIL1-202ENST00000561643 CENPBP07199 599 aaPredicted RBP16.37■□□□□ 0.21
NEIL1-202ENST00000561643 KIF27Q86VH2 1401 aa16.35■□□□□ 0.21
NEIL1-202ENST00000561643 CFTRP13569 1480 aa16.35■□□□□ 0.21
NEIL1-202ENST00000561643 ZNF316A6NFI3 1004 aaPredicted RBP16.33■□□□□ 0.2
NEIL1-202ENST00000561643 BCL11AQ9H165 835 aa16.32■□□□□ 0.2
NEIL1-202ENST00000561643 ARAP1Q96P48 1450 aa16.29■□□□□ 0.2
NEIL1-202ENST00000561643 DNAJC5BQ9UF47 199 aa16.29■□□□□ 0.2
NEIL1-202ENST00000561643 PRKCSHP14314 528 aaPredicted RBP16.24■□□□□ 0.19
NEIL1-202ENST00000561643 KANK4Q5T7N3 995 aaPredicted RBP16.23■□□□□ 0.19
NEIL1-202ENST00000561643 CADPSQ9ULU8 1353 aa16.19■□□□□ 0.18
NEIL1-202ENST00000561643 CUX2O14529 1486 aa16.19■□□□□ 0.18
NEIL1-202ENST00000561643 PRDM2Q13029 1718 aa16.17■□□□□ 0.18
NEIL1-202ENST00000561643 ARHGAP35Q9NRY4 1499 aa16.16■□□□□ 0.18
NEIL1-202ENST00000561643 IGF1RP08069 1367 aa16.14■□□□□ 0.17
NEIL1-202ENST00000561643 CC2D2AQ9P2K1 1620 aa16.14■□□□□ 0.17
NEIL1-202ENST00000561643 YTHDC1Q96MU7 727 aaKnown RBP16.13■□□□□ 0.17
NEIL1-202ENST00000561643 FGD5Q6ZNL6 1462 aa16.11■□□□□ 0.17
NEIL1-202ENST00000561643 RRBP1Q9P2E9 1410 aaKnown RBP16.11■□□□□ 0.17
NEIL1-202ENST00000561643 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
NEIL1-202ENST00000561643 DHX57Q6P158 1386 aaKnown RBP16.1■□□□□ 0.17
NEIL1-202ENST00000561643 CARMIL1Q5VZK9 1371 aa16.1■□□□□ 0.17
NEIL1-202ENST00000561643 CCNB3Q8WWL7 1395 aa16.08■□□□□ 0.16
NEIL1-202ENST00000561643 MIER1Q8N108 512 aa16.07■□□□□ 0.16
NEIL1-202ENST00000561643 ITGAEP38570 1179 aa16.06■□□□□ 0.16
NEIL1-202ENST00000561643 FANCD2Q9BXW9 1451 aa16.03■□□□□ 0.16
NEIL1-202ENST00000561643 TIAM1Q13009 1591 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms