RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AEBP2Q6ZN18 517 aaPredicted RBP18.8■□□□□ 0.6
VPS13C-206ENST00000558338 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
VPS13C-206ENST00000558338 SENP3Q9H4L4 574 aaPredicted RBP16.12■□□□□ 0.17
VPS13C-206ENST00000558338 PHF23Q9BUL5 403 aaPredicted RBP15.82■□□□□ 0.12
VPS13C-206ENST00000558338 POTEDQ86YR6 584 aa15.69■□□□□ 0.1
VPS13C-206ENST00000558338 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
VPS13C-206ENST00000558338 FOXD1Q16676 465 aa15.1■□□□□ 0.01
VPS13C-206ENST00000558338 MSH5O43196 834 aa14.34□□□□□ -0.11
VPS13C-206ENST00000558338 PIAS4Q8N2W9 510 aaPredicted RBP13.97□□□□□ -0.17
VPS13C-206ENST00000558338 PPP6R1Q9UPN7 881 aa13.67□□□□□ -0.22
VPS13C-206ENST00000558338 ADRA2BP18089 450 aa13.61□□□□□ -0.23
VPS13C-206ENST00000558338 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
VPS13C-206ENST00000558338 CCDC180Q9P1Z9 1646 aa13.38□□□□□ -0.27
VPS13C-206ENST00000558338 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
VPS13C-206ENST00000558338 DCAF1Q9Y4B6 1507 aa12.84□□□□□ -0.35
VPS13C-206ENST00000558338 SHROOM4Q9ULL8 1493 aa12.83□□□□□ -0.36
VPS13C-206ENST00000558338 CACNB1Q02641 598 aaPredicted RBP12.76□□□□□ -0.37
VPS13C-206ENST00000558338 DMRT2Q9Y5R5 561 aa12.7□□□□□ -0.38
VPS13C-206ENST00000558338 MAPK8IP2Q13387 824 aaPredicted RBP12.67□□□□□ -0.38
VPS13C-206ENST00000558338 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
VPS13C-206ENST00000558338 MYO15BQ96JP2 1530 aa12.55□□□□□ -0.4
VPS13C-206ENST00000558338 SUPT5HO00267 1087 aaKnown RBP12.53□□□□□ -0.4
VPS13C-206ENST00000558338 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
VPS13C-206ENST00000558338 SCAF1Q9H7N4 1312 aaKnown RBP12.45□□□□□ -0.42
VPS13C-206ENST00000558338 ABCC9O60706 1549 aa12.36□□□□□ -0.43
VPS13C-206ENST00000558338 NACADO15069 1562 aa12.35□□□□□ -0.43
VPS13C-206ENST00000558338 SCRIBQ14160 1630 aa12.3□□□□□ -0.44
VPS13C-206ENST00000558338 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
VPS13C-206ENST00000558338 DCAF8L1A6NGE4 600 aa12.21□□□□□ -0.46
VPS13C-206ENST00000558338 RNF39Q9H2S5 420 aa12.19□□□□□ -0.46
VPS13C-206ENST00000558338 RB1CC1Q8TDY2 1594 aa12.15□□□□□ -0.46
VPS13C-206ENST00000558338 RSF1Q96T23 1441 aaPredicted RBP12.12□□□□□ -0.47
VPS13C-206ENST00000558338 POTEHQ6S545 545 aa12.07□□□□□ -0.48
VPS13C-206ENST00000558338 HOXD11P31277 338 aaPredicted RBP12.01□□□□□ -0.49
VPS13C-206ENST00000558338 C1QBPQ07021 282 aaKnown RBP11.97□□□□□ -0.49
VPS13C-206ENST00000558338 BAZ1AQ9NRL2 1556 aaPredicted RBP11.95□□□□□ -0.5
VPS13C-206ENST00000558338 MROH2BQ7Z745 1585 aa11.94□□□□□ -0.5
VPS13C-206ENST00000558338 CECR2Q9BXF3 1484 aa11.94□□□□□ -0.5
VPS13C-206ENST00000558338 UNC13AQ9UPW8 1703 aa11.9□□□□□ -0.5
VPS13C-206ENST00000558338 WIZO95785 1651 aa11.88□□□□□ -0.51
VPS13C-206ENST00000558338 SMARCA4P51532 1647 aa11.83□□□□□ -0.52
VPS13C-206ENST00000558338 PPP4R3CPQ6ZMV5 832 aa11.83□□□□□ -0.52
VPS13C-206ENST00000558338 TOP2AP11388 1531 aaKnown RBP11.81□□□□□ -0.52
VPS13C-206ENST00000558338 TRIM41Q8WV44 630 aa11.79□□□□□ -0.52
VPS13C-206ENST00000558338 RNF216Q9NWF9 866 aaPredicted RBP11.77□□□□□ -0.53
VPS13C-206ENST00000558338 EIF4G1Q04637 1599 aaKnown RBP11.76□□□□□ -0.53
VPS13C-206ENST00000558338 CNKSR2Q8WXI2 1034 aa11.74□□□□□ -0.53
VPS13C-206ENST00000558338 BICRAQ9NZM4 1560 aa11.73□□□□□ -0.53
VPS13C-206ENST00000558338 LOC105371045A0A1W2PR82 267 aa11.71□□□□□ -0.53
VPS13C-206ENST00000558338 DNAJC5BQ9UF47 199 aa11.7□□□□□ -0.54
VPS13C-206ENST00000558338 SMARCA2P51531 1590 aa11.69□□□□□ -0.54
VPS13C-206ENST00000558338 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
VPS13C-206ENST00000558338 HRCP23327 699 aa11.65□□□□□ -0.54
VPS13C-206ENST00000558338 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
VPS13C-206ENST00000558338 PCGF6Q9BYE7 350 aa11.63□□□□□ -0.55
VPS13C-206ENST00000558338 RTN4Q9NQC3 1192 aaKnown RBP11.59□□□□□ -0.55
VPS13C-206ENST00000558338 TRIM26Q12899 539 aaPredicted RBP11.58□□□□□ -0.56
VPS13C-206ENST00000558338 PABPN1Q86U42 306 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS13C-206ENST00000558338 FAM9AQ8IZU1 332 aaPredicted RBP11.53□□□□□ -0.56
VPS13C-206ENST00000558338 EEA1Q15075 1411 aa11.52□□□□□ -0.56
VPS13C-206ENST00000558338 ABCC8Q09428 1581 aa11.52□□□□□ -0.57
VPS13C-206ENST00000558338 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.57
VPS13C-206ENST00000558338 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
VPS13C-206ENST00000558338 KCNA4P22459 653 aa11.5□□□□□ -0.57
VPS13C-206ENST00000558338 BAZ1BQ9UIG0 1483 aaKnown RBP11.5□□□□□ -0.57
VPS13C-206ENST00000558338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.44□□□□□ -0.586e-7■■■■□ 22.5
VPS13C-206ENST00000558338 WRNQ14191 1432 aaPredicted RBP eCLIP11.43□□□□□ -0.58
VPS13C-206ENST00000558338 AMER1Q5JTC6 1135 aaPredicted RBP11.42□□□□□ -0.58
VPS13C-206ENST00000558338 HMGXB3Q12766 1538 aa11.42□□□□□ -0.58
VPS13C-206ENST00000558338 ZEB1P37275 1124 aaPredicted RBP11.38□□□□□ -0.59
VPS13C-206ENST00000558338 TNIKQ9UKE5 1360 aa11.38□□□□□ -0.59
VPS13C-206ENST00000558338 SOGA1O94964 1423 aa11.37□□□□□ -0.59
VPS13C-206ENST00000558338 GOLGA3Q08378 1498 aa11.36□□□□□ -0.59
VPS13C-206ENST00000558338 SYNJ1O43426 1573 aa11.36□□□□□ -0.59
VPS13C-206ENST00000558338 NCAPD3P42695 1498 aa11.35□□□□□ -0.59
VPS13C-206ENST00000558338 KIF21BO75037 1637 aa11.34□□□□□ -0.59
VPS13C-206ENST00000558338 CEP162Q5TB80 1403 aa11.33□□□□□ -0.59
VPS13C-206ENST00000558338 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
VPS13C-206ENST00000558338 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
VPS13C-206ENST00000558338 BIVM-ERCC5R4GMW8 1640 aa11.31□□□□□ -0.6
VPS13C-206ENST00000558338 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
VPS13C-206ENST00000558338 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
VPS13C-206ENST00000558338 PPARGC1BQ86YN6 1023 aaKnown RBP11.23□□□□□ -0.61
VPS13C-206ENST00000558338 UBTFP17480 764 aaKnown RBP11.23□□□□□ -0.61
VPS13C-206ENST00000558338 DSG3P32926 999 aa11.22□□□□□ -0.61
VPS13C-206ENST00000558338 CFTRP13569 1480 aa11.21□□□□□ -0.62
VPS13C-206ENST00000558338 NCBP3Q53F19 620 aaKnown RBP11.21□□□□□ -0.62
VPS13C-206ENST00000558338 ERICH3Q5RHP9 1530 aa11.2□□□□□ -0.62
VPS13C-206ENST00000558338 CAPN15O75808 1086 aa11.16□□□□□ -0.62
VPS13C-206ENST00000558338 CLIP1P30622 1438 aa11.16□□□□□ -0.62
VPS13C-206ENST00000558338 CUX1P39880 1505 aa11.15□□□□□ -0.62
VPS13C-206ENST00000558338 SPINK5Q9NQ38 1064 aaPredicted RBP11.15□□□□□ -0.62
VPS13C-206ENST00000558338 U3KPZ7 1027 aaPredicted RBP11.15□□□□□ -0.62
VPS13C-206ENST00000558338 RAPGEF2Q9Y4G8 1499 aa11.14□□□□□ -0.63
VPS13C-206ENST00000558338 VPS8Q8N3P4 1428 aa11.13□□□□□ -0.63
VPS13C-206ENST00000558338 PRXQ9BXM0 1461 aa11.13□□□□□ -0.63
VPS13C-206ENST00000558338 KIF27Q86VH2 1401 aa11.12□□□□□ -0.63
VPS13C-206ENST00000558338 CC2D2AQ9P2K1 1620 aa11.09□□□□□ -0.63
VPS13C-206ENST00000558338 CADPSQ9ULU8 1353 aa11.08□□□□□ -0.64
VPS13C-206ENST00000558338 SLC4A1APQ9BWU0 796 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms