RNA–Protein interactions for RNA: ENST00000557410.5

SV2B-206, Transcript of synaptic vesicle glycoprotein 2B, humanhuman

TSL 1 (best)

Gene SV2B, Length 4,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SV2B-206ENST00000557410 NISCHQ9Y2I1 1504 aa15.93■□□□□ 0.14
SV2B-206ENST00000557410 DCAF8L2P0C7V8 631 aa13.8□□□□□ -0.2
SV2B-206ENST00000557410 SHROOM4Q9ULL8 1493 aa13.66□□□□□ -0.22
SV2B-206ENST00000557410 CCDC180Q9P1Z9 1646 aa13.54□□□□□ -0.24
SV2B-206ENST00000557410 ZCCHC6Q5VYS8 1495 aaKnown RBP13.46□□□□□ -0.25
SV2B-206ENST00000557410 SUPT5HO00267 1087 aaKnown RBP13.41□□□□□ -0.26
SV2B-206ENST00000557410 DCAF1Q9Y4B6 1507 aa13.05□□□□□ -0.32
SV2B-206ENST00000557410 CHIC1Q5VXU3 224 aa12.98□□□□□ -0.33
SV2B-206ENST00000557410 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
SV2B-206ENST00000557410 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
SV2B-206ENST00000557410 ABCC9O60706 1549 aa12.7□□□□□ -0.38
SV2B-206ENST00000557410 EHMT2Q96KQ7 1210 aa12.63□□□□□ -0.39
SV2B-206ENST00000557410 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
SV2B-206ENST00000557410 LOC105371045A0A1W2PR82 267 aa12.62□□□□□ -0.39
SV2B-206ENST00000557410 RSF1Q96T23 1441 aaPredicted RBP12.61□□□□□ -0.39
SV2B-206ENST00000557410 HRCP23327 699 aa12.57□□□□□ -0.4
SV2B-206ENST00000557410 NACADO15069 1562 aa12.54□□□□□ -0.4
SV2B-206ENST00000557410 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
SV2B-206ENST00000557410 RB1CC1Q8TDY2 1594 aa12.47□□□□□ -0.41
SV2B-206ENST00000557410 FAM9AQ8IZU1 332 aaPredicted RBP12.46□□□□□ -0.41
SV2B-206ENST00000557410 CECR2Q9BXF3 1484 aa12.43□□□□□ -0.42
SV2B-206ENST00000557410 MROH2BQ7Z745 1585 aa12.39□□□□□ -0.43
SV2B-206ENST00000557410 TRIM26Q12899 539 aaPredicted RBP12.37□□□□□ -0.43
SV2B-206ENST00000557410 WIZO95785 1651 aa12.33□□□□□ -0.44
SV2B-206ENST00000557410 PPARGC1BQ86YN6 1023 aaKnown RBP12.32□□□□□ -0.44
SV2B-206ENST00000557410 BAZ1AQ9NRL2 1556 aaPredicted RBP12.25□□□□□ -0.45
SV2B-206ENST00000557410 PABPN1Q86U42 306 aaKnown RBP eCLIP12.25□□□□□ -0.45
SV2B-206ENST00000557410 TTBK1Q5TCY1 1321 aaPredicted RBP12.23□□□□□ -0.45
SV2B-206ENST00000557410 SMARCA4P51532 1647 aa12.14□□□□□ -0.47
SV2B-206ENST00000557410 TOP2AP11388 1531 aaKnown RBP12.13□□□□□ -0.47
SV2B-206ENST00000557410 UNC13AQ9UPW8 1703 aa12.13□□□□□ -0.47
SV2B-206ENST00000557410 ZEB1P37275 1124 aaPredicted RBP12.12□□□□□ -0.47
SV2B-206ENST00000557410 EIF4G1Q04637 1599 aaKnown RBP12.09□□□□□ -0.47
SV2B-206ENST00000557410 CCDC88BA6NC98 1476 aa12.09□□□□□ -0.47
SV2B-206ENST00000557410 CCER1Q8TC90 406 aaPredicted RBP12.08□□□□□ -0.48
SV2B-206ENST00000557410 ABCC8Q09428 1581 aa12.06□□□□□ -0.48
SV2B-206ENST00000557410 SMARCA2P51531 1590 aa12.06□□□□□ -0.48
SV2B-206ENST00000557410 APLP2Q06481 763 aa12.02□□□□□ -0.49
SV2B-206ENST00000557410 CENPBP07199 599 aaPredicted RBP12.01□□□□□ -0.49
SV2B-206ENST00000557410 PELP1Q8IZL8 1130 aaKnown RBP11.98□□□□□ -0.49
SV2B-206ENST00000557410 BICRAQ9NZM4 1560 aa11.97□□□□□ -0.49
SV2B-206ENST00000557410 SOGA1O94964 1423 aa11.95□□□□□ -0.5
SV2B-206ENST00000557410 UBTFP17480 764 aaKnown RBP11.93□□□□□ -0.5
SV2B-206ENST00000557410 RANGAP1P46060 587 aaPredicted RBP11.93□□□□□ -0.5
SV2B-206ENST00000557410 CSRNP3Q8WYN3 585 aa11.92□□□□□ -0.5
SV2B-206ENST00000557410 CEP162Q5TB80 1403 aa11.91□□□□□ -0.5
SV2B-206ENST00000557410 EEA1Q15075 1411 aa11.9□□□□□ -0.5
SV2B-206ENST00000557410 YTHDC1Q96MU7 727 aaKnown RBP11.89□□□□□ -0.51
SV2B-206ENST00000557410 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.88□□□□□ -0.51
SV2B-206ENST00000557410 TNIKQ9UKE5 1360 aa11.88□□□□□ -0.51
SV2B-206ENST00000557410 RUSC2Q8N2Y8 1516 aa11.88□□□□□ -0.51
SV2B-206ENST00000557410 WRNQ14191 1432 aaPredicted RBP eCLIP11.88□□□□□ -0.51
SV2B-206ENST00000557410 PEG3Q9GZU2 1588 aa11.87□□□□□ -0.51
SV2B-206ENST00000557410 BAZ1BQ9UIG0 1483 aaKnown RBP11.84□□□□□ -0.51
SV2B-206ENST00000557410 ATAD2BQ9ULI0 1458 aa11.84□□□□□ -0.51
SV2B-206ENST00000557410 GOLGA3Q08378 1498 aa11.83□□□□□ -0.52
SV2B-206ENST00000557410 SYNJ1O43426 1573 aa11.79□□□□□ -0.52
SV2B-206ENST00000557410 CEP164Q9UPV0 1460 aa11.76□□□□□ -0.53
SV2B-206ENST00000557410 KIF21BO75037 1637 aa11.71□□□□□ -0.53
SV2B-206ENST00000557410 CLIP1P30622 1438 aa11.7□□□□□ -0.54
SV2B-206ENST00000557410 RAPGEF2Q9Y4G8 1499 aa11.66□□□□□ -0.54
SV2B-206ENST00000557410 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.55
SV2B-206ENST00000557410 TOP2BQ02880 1626 aa11.64□□□□□ -0.55
SV2B-206ENST00000557410 VPS8Q8N3P4 1428 aa11.63□□□□□ -0.55
SV2B-206ENST00000557410 DIEXFQ68CQ4 756 aaKnown RBP11.62□□□□□ -0.55
SV2B-206ENST00000557410 ATP1B4Q9UN42 357 aaPredicted RBP11.62□□□□□ -0.55
SV2B-206ENST00000557410 MYT1Q01538 1121 aa11.6□□□□□ -0.55
SV2B-206ENST00000557410 NCAPD3P42695 1498 aa11.6□□□□□ -0.55
SV2B-206ENST00000557410 HMGXB3Q12766 1538 aa11.59□□□□□ -0.55
SV2B-206ENST00000557410 BIVM-ERCC5R4GMW8 1640 aa11.59□□□□□ -0.55
SV2B-206ENST00000557410 SCAF1Q9H7N4 1312 aaKnown RBP11.56□□□□□ -0.56
SV2B-206ENST00000557410 CUX1P39880 1505 aa11.53□□□□□ -0.56
SV2B-206ENST00000557410 ERICH6Q7L0X2 663 aa11.53□□□□□ -0.56
SV2B-206ENST00000557410 ERICH3Q5RHP9 1530 aa11.53□□□□□ -0.56
SV2B-206ENST00000557410 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
SV2B-206ENST00000557410 GTF3C3Q9Y5Q9 886 aa11.53□□□□□ -0.56
SV2B-206ENST00000557410 KIF27Q86VH2 1401 aa11.53□□□□□ -0.56
SV2B-206ENST00000557410 PRXQ9BXM0 1461 aa11.52□□□□□ -0.57
SV2B-206ENST00000557410 ITGAEP38570 1179 aa11.52□□□□□ -0.57
SV2B-206ENST00000557410 NEFLP07196 543 aa11.52□□□□□ -0.57
SV2B-206ENST00000557410 CFTRP13569 1480 aa11.51□□□□□ -0.57
SV2B-206ENST00000557410 ACIN1Q9UKV3 1341 aaKnown RBP11.49□□□□□ -0.57
SV2B-206ENST00000557410 ARAP1Q96P48 1450 aa11.47□□□□□ -0.57
SV2B-206ENST00000557410 NEUROD1Q13562 356 aa11.46□□□□□ -0.57
SV2B-206ENST00000557410 KANK4Q5T7N3 995 aaPredicted RBP11.44□□□□□ -0.58
SV2B-206ENST00000557410 CUX2O14529 1486 aa11.42□□□□□ -0.58
SV2B-206ENST00000557410 PRDM2Q13029 1718 aa11.41□□□□□ -0.58
SV2B-206ENST00000557410 CADPSQ9ULU8 1353 aa11.4□□□□□ -0.58
SV2B-206ENST00000557410 ARHGAP35Q9NRY4 1499 aa11.38□□□□□ -0.59
SV2B-206ENST00000557410 IGF1RP08069 1367 aa11.37□□□□□ -0.59
SV2B-206ENST00000557410 FBLN2P98095 1184 aa11.37□□□□□ -0.59
SV2B-206ENST00000557410 FGD5Q6ZNL6 1462 aa11.35□□□□□ -0.59
SV2B-206ENST00000557410 CARMIL1Q5VZK9 1371 aa11.35□□□□□ -0.59
SV2B-206ENST00000557410 MIER1Q8N108 512 aa11.35□□□□□ -0.59
SV2B-206ENST00000557410 DHX57Q6P158 1386 aaKnown RBP11.34□□□□□ -0.59
SV2B-206ENST00000557410 CLSPNQ9HAW4 1339 aa11.34□□□□□ -0.59
SV2B-206ENST00000557410 RRBP1Q9P2E9 1410 aaKnown RBP11.34□□□□□ -0.59
SV2B-206ENST00000557410 CCNB3Q8WWL7 1395 aa11.33□□□□□ -0.6
SV2B-206ENST00000557410 CC2D2AQ9P2K1 1620 aa11.33□□□□□ -0.6
SV2B-206ENST00000557410 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms