RNA–Protein interactions for RNA: ENST00000557380.5

NEMF-215, Transcript of nuclear export mediator factor, humanhuman

TSL 1 (best)

Gene NEMF, Length 1,742 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEMF-215ENST00000557380 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
NEMF-215ENST00000557380 CHIC1Q5VXU3 224 aa21.3■■□□□ 1
NEMF-215ENST00000557380 SENP3Q9H4L4 574 aaPredicted RBP18.97■□□□□ 0.63
NEMF-215ENST00000557380 NISCHQ9Y2I1 1504 aa18.97■□□□□ 0.63
NEMF-215ENST00000557380 PHF23Q9BUL5 403 aaPredicted RBP18.72■□□□□ 0.59
NEMF-215ENST00000557380 FOXD1Q16676 465 aa17.61■□□□□ 0.41
NEMF-215ENST00000557380 POTEDQ86YR6 584 aa17.55■□□□□ 0.4
NEMF-215ENST00000557380 PLPPR3Q6T4P5 718 aa17.16■□□□□ 0.34
NEMF-215ENST00000557380 ADRA2BP18089 450 aa16.61■□□□□ 0.25
NEMF-215ENST00000557380 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
NEMF-215ENST00000557380 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
NEMF-215ENST00000557380 CCDC180Q9P1Z9 1646 aa16.46■□□□□ 0.23
NEMF-215ENST00000557380 MSH5O43196 834 aa16.45■□□□□ 0.22
NEMF-215ENST00000557380 ZCCHC6Q5VYS8 1495 aaKnown RBP15.98■□□□□ 0.15
NEMF-215ENST00000557380 DCAF1Q9Y4B6 1507 aa15.74■□□□□ 0.11
NEMF-215ENST00000557380 SHROOM4Q9ULL8 1493 aa15.5■□□□□ 0.07
NEMF-215ENST00000557380 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
NEMF-215ENST00000557380 DCAF8L2P0C7V8 631 aa15.46■□□□□ 0.07
NEMF-215ENST00000557380 NACADO15069 1562 aa15.28■□□□□ 0.04
NEMF-215ENST00000557380 ABCC9O60706 1549 aa15.27■□□□□ 0.04
NEMF-215ENST00000557380 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
NEMF-215ENST00000557380 MAPK8IP2Q13387 824 aaPredicted RBP15.17■□□□□ 0.02
NEMF-215ENST00000557380 SCRIBQ14160 1630 aa15.08■□□□□ 0.01
NEMF-215ENST00000557380 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
NEMF-215ENST00000557380 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
NEMF-215ENST00000557380 DMRT2Q9Y5R5 561 aa15.05■□□□□ -0
NEMF-215ENST00000557380 SUPT5HO00267 1087 aaKnown RBP15.04■□□□□ -0
NEMF-215ENST00000557380 RSF1Q96T23 1441 aaPredicted RBP14.79□□□□□ -0.04
NEMF-215ENST00000557380 UNC13AQ9UPW8 1703 aa14.76□□□□□ -0.05
NEMF-215ENST00000557380 CNKSR2Q8WXI2 1034 aa14.72□□□□□ -0.05
NEMF-215ENST00000557380 CECR2Q9BXF3 1484 aa14.68□□□□□ -0.06
NEMF-215ENST00000557380 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
NEMF-215ENST00000557380 BAZ1AQ9NRL2 1556 aaPredicted RBP14.63□□□□□ -0.07
NEMF-215ENST00000557380 BICRAQ9NZM4 1560 aa14.61□□□□□ -0.07
NEMF-215ENST00000557380 NCBP3Q53F19 620 aaKnown RBP14.58□□□□□ -0.08
NEMF-215ENST00000557380 HOXD11P31277 338 aaPredicted RBP14.55□□□□□ -0.08
NEMF-215ENST00000557380 DCAF8L1A6NGE4 600 aa14.54□□□□□ -0.08
NEMF-215ENST00000557380 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.08
NEMF-215ENST00000557380 SMARCA4P51532 1647 aa14.52□□□□□ -0.08
NEMF-215ENST00000557380 WIZO95785 1651 aa14.51□□□□□ -0.09
NEMF-215ENST00000557380 PABPN1Q86U42 306 aaKnown RBP eCLIP14.44□□□□□ -0.1
NEMF-215ENST00000557380 TOP2AP11388 1531 aaKnown RBP14.4□□□□□ -0.1
NEMF-215ENST00000557380 PEG3Q9GZU2 1588 aa14.38□□□□□ -0.11
NEMF-215ENST00000557380 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
NEMF-215ENST00000557380 NPM3O75607 178 aaKnown RBP14.31□□□□□ -0.12
NEMF-215ENST00000557380 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
NEMF-215ENST00000557380 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
NEMF-215ENST00000557380 CCDC88BA6NC98 1476 aa14.24□□□□□ -0.13
NEMF-215ENST00000557380 ATAD2BQ9ULI0 1458 aa14.23□□□□□ -0.13
NEMF-215ENST00000557380 KCNA4P22459 653 aa14.23□□□□□ -0.13
NEMF-215ENST00000557380 TRIM41Q8WV44 630 aa14.17□□□□□ -0.14
NEMF-215ENST00000557380 BAZ1BQ9UIG0 1483 aaKnown RBP14.15□□□□□ -0.14
NEMF-215ENST00000557380 NCAPD3P42695 1498 aa14.1□□□□□ -0.15
NEMF-215ENST00000557380 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
NEMF-215ENST00000557380 RNF39Q9H2S5 420 aa14.02□□□□□ -0.16
NEMF-215ENST00000557380 DNAJC5BQ9UF47 199 aa13.98□□□□□ -0.17
NEMF-215ENST00000557380 LOC105371045A0A1W2PR82 267 aa13.98□□□□□ -0.17
NEMF-215ENST00000557380 ABCC8Q09428 1581 aa13.97□□□□□ -0.17
NEMF-215ENST00000557380 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.17
NEMF-215ENST00000557380 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.18
NEMF-215ENST00000557380 EEA1Q15075 1411 aa13.87□□□□□ -0.19
NEMF-215ENST00000557380 CC2D2AQ9P2K1 1620 aa13.86□□□□□ -0.19
NEMF-215ENST00000557380 C1QBPQ07021 282 aaKnown RBP13.85□□□□□ -0.19
NEMF-215ENST00000557380 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
NEMF-215ENST00000557380 CFTRP13569 1480 aa13.83□□□□□ -0.2
NEMF-215ENST00000557380 SYNJ1O43426 1573 aa13.82□□□□□ -0.2
NEMF-215ENST00000557380 TOP2BQ02880 1626 aa13.79□□□□□ -0.2
NEMF-215ENST00000557380 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
NEMF-215ENST00000557380 SOGA1O94964 1423 aa13.77□□□□□ -0.21
NEMF-215ENST00000557380 BIVM-ERCC5R4GMW8 1640 aa13.77□□□□□ -0.21
NEMF-215ENST00000557380 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
NEMF-215ENST00000557380 CSRNP3Q8WYN3 585 aa13.72□□□□□ -0.21
NEMF-215ENST00000557380 RUSC2Q8N2Y8 1516 aa13.7□□□□□ -0.22
NEMF-215ENST00000557380 CUX1P39880 1505 aa13.67□□□□□ -0.22
NEMF-215ENST00000557380 TNIKQ9UKE5 1360 aa13.66□□□□□ -0.22
NEMF-215ENST00000557380 KIF21BO75037 1637 aa13.65□□□□□ -0.22
NEMF-215ENST00000557380 GOLGA3Q08378 1498 aa13.65□□□□□ -0.22
NEMF-215ENST00000557380 CEP164Q9UPV0 1460 aa13.63□□□□□ -0.23
NEMF-215ENST00000557380 U3KPZ7 1027 aaPredicted RBP13.62□□□□□ -0.23
NEMF-215ENST00000557380 SLC4A2P04920 1241 aa13.59□□□□□ -0.23
NEMF-215ENST00000557380 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
NEMF-215ENST00000557380 TRIM26Q12899 539 aaPredicted RBP13.57□□□□□ -0.24
NEMF-215ENST00000557380 CEP162Q5TB80 1403 aa13.57□□□□□ -0.24
NEMF-215ENST00000557380 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
NEMF-215ENST00000557380 FANCD2Q9BXW9 1451 aa13.56□□□□□ -0.24
NEMF-215ENST00000557380 PCGF6Q9BYE7 350 aa13.56□□□□□ -0.24
NEMF-215ENST00000557380 KIF27Q86VH2 1401 aa13.54□□□□□ -0.24
NEMF-215ENST00000557380 ERICH3Q5RHP9 1530 aa13.53□□□□□ -0.24
NEMF-215ENST00000557380 PRXQ9BXM0 1461 aa13.52□□□□□ -0.25
NEMF-215ENST00000557380 UBTFP17480 764 aaKnown RBP13.52□□□□□ -0.25
NEMF-215ENST00000557380 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
NEMF-215ENST00000557380 DNMBPQ6XZF7 1577 aa13.5□□□□□ -0.25
NEMF-215ENST00000557380 POTEHQ6S545 545 aa13.5□□□□□ -0.25
NEMF-215ENST00000557380 RAPGEF2Q9Y4G8 1499 aa13.49□□□□□ -0.25
NEMF-215ENST00000557380 NESP48681 1621 aa13.48□□□□□ -0.25
NEMF-215ENST00000557380 FGD5Q6ZNL6 1462 aa13.48□□□□□ -0.25
NEMF-215ENST00000557380 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
NEMF-215ENST00000557380 TOPBP1Q92547 1522 aa13.45□□□□□ -0.26
NEMF-215ENST00000557380 CUX2O14529 1486 aa13.43□□□□□ -0.26
NEMF-215ENST00000557380 CLIP1P30622 1438 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms