RNA–Protein interactions for RNA: ENST00000554981.1

TMEM260-205, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 549 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-205ENST00000554981 AEBP2Q6ZN18 517 aaPredicted RBP17.28■□□□□ 0.36
TMEM260-205ENST00000554981 CHIC1Q5VXU3 224 aa16.86■□□□□ 0.29
TMEM260-205ENST00000554981 PHF23Q9BUL5 403 aaPredicted RBP14.81□□□□□ -0.04
TMEM260-205ENST00000554981 SENP3Q9H4L4 574 aaPredicted RBP14.67□□□□□ -0.06
TMEM260-205ENST00000554981 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
TMEM260-205ENST00000554981 FOXD1Q16676 465 aa13.67□□□□□ -0.22
TMEM260-205ENST00000554981 NISCHQ9Y2I1 1504 aa13.56□□□□□ -0.24
TMEM260-205ENST00000554981 ADRA2BP18089 450 aa13.06□□□□□ -0.32
TMEM260-205ENST00000554981 PPP6R1Q9UPN7 881 aa13.02□□□□□ -0.33
TMEM260-205ENST00000554981 ABCC9O60706 1549 aa12.88□□□□□ -0.35
TMEM260-205ENST00000554981 PIAS4Q8N2W9 510 aaPredicted RBP12.77□□□□□ -0.37
TMEM260-205ENST00000554981 MSH5O43196 834 aa12.72□□□□□ -0.37
TMEM260-205ENST00000554981 DNAJC5BQ9UF47 199 aa12.6□□□□□ -0.39
TMEM260-205ENST00000554981 CCDC180Q9P1Z9 1646 aa12.24□□□□□ -0.45
TMEM260-205ENST00000554981 PPP4R3CPQ6ZMV5 832 aa12.2□□□□□ -0.46
TMEM260-205ENST00000554981 POTEDQ86YR6 584 aa12.19□□□□□ -0.46
TMEM260-205ENST00000554981 KCNA4P22459 653 aa12.12□□□□□ -0.47
TMEM260-205ENST00000554981 SCAF1Q9H7N4 1312 aaKnown RBP12.04□□□□□ -0.48
TMEM260-205ENST00000554981 NCBP3Q53F19 620 aaKnown RBP12□□□□□ -0.49
TMEM260-205ENST00000554981 RB1CC1Q8TDY2 1594 aa11.93□□□□□ -0.5
TMEM260-205ENST00000554981 PABPN1Q86U42 306 aaKnown RBP eCLIP11.93□□□□□ -0.5
TMEM260-205ENST00000554981 DNAJC5Q9H3Z4 198 aa11.88□□□□□ -0.51
TMEM260-205ENST00000554981 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
TMEM260-205ENST00000554981 MAPK8IP2Q13387 824 aaPredicted RBP11.79□□□□□ -0.52
TMEM260-205ENST00000554981 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
TMEM260-205ENST00000554981 UNC13AQ9UPW8 1703 aa11.72□□□□□ -0.53
TMEM260-205ENST00000554981 NACADO15069 1562 aa11.69□□□□□ -0.54
TMEM260-205ENST00000554981 DMRT2Q9Y5R5 561 aa11.68□□□□□ -0.54
TMEM260-205ENST00000554981 DCAF8L2P0C7V8 631 aa11.66□□□□□ -0.54
TMEM260-205ENST00000554981 BICRAQ9NZM4 1560 aa11.66□□□□□ -0.54
TMEM260-205ENST00000554981 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
TMEM260-205ENST00000554981 CECR2Q9BXF3 1484 aa11.62□□□□□ -0.55
TMEM260-205ENST00000554981 CC2D2AQ9P2K1 1620 aa11.57□□□□□ -0.56
TMEM260-205ENST00000554981 EHMT2Q96KQ7 1210 aa11.54□□□□□ -0.56
TMEM260-205ENST00000554981 RNF216Q9NWF9 866 aaPredicted RBP11.53□□□□□ -0.56
TMEM260-205ENST00000554981 EIF4G1Q04637 1599 aaKnown RBP11.4□□□□□ -0.58
TMEM260-205ENST00000554981 HOXD11P31277 338 aaPredicted RBP11.39□□□□□ -0.59
TMEM260-205ENST00000554981 SHROOM4Q9ULL8 1493 aa11.31□□□□□ -0.6
TMEM260-205ENST00000554981 MYO15BQ96JP2 1530 aa11.3□□□□□ -0.6
TMEM260-205ENST00000554981 ZCCHC6Q5VYS8 1495 aaKnown RBP11.28□□□□□ -0.6
TMEM260-205ENST00000554981 CSRNP3Q8WYN3 585 aa11.24□□□□□ -0.61
TMEM260-205ENST00000554981 CUX2O14529 1486 aa11.23□□□□□ -0.61
TMEM260-205ENST00000554981 SCRIBQ14160 1630 aa11.23□□□□□ -0.61
TMEM260-205ENST00000554981 TRIM41Q8WV44 630 aa11.22□□□□□ -0.61
TMEM260-205ENST00000554981 DCAF8L1A6NGE4 600 aa11.19□□□□□ -0.62
TMEM260-205ENST00000554981 DCAF1Q9Y4B6 1507 aa11.16□□□□□ -0.62
TMEM260-205ENST00000554981 FOXD4L1Q9NU39 408 aa11.12□□□□□ -0.63
TMEM260-205ENST00000554981 ERCC6Q03468 1493 aa11.12□□□□□ -0.63
TMEM260-205ENST00000554981 ZBTB22O15209 634 aa11.1□□□□□ -0.63
TMEM260-205ENST00000554981 SLC4A2P04920 1241 aa11□□□□□ -0.65
TMEM260-205ENST00000554981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.97□□□□□ -0.65
TMEM260-205ENST00000554981 NESP48681 1621 aa10.92□□□□□ -0.66
TMEM260-205ENST00000554981 RNF39Q9H2S5 420 aa10.9□□□□□ -0.66
TMEM260-205ENST00000554981 MYCNP04198 464 aaPredicted RBP10.88□□□□□ -0.67
TMEM260-205ENST00000554981 THOC2Q8NI27 1593 aaKnown RBP10.87□□□□□ -0.67
TMEM260-205ENST00000554981 NCAPD3P42695 1498 aa10.81□□□□□ -0.68
TMEM260-205ENST00000554981 SMARCA2P51531 1590 aa10.81□□□□□ -0.68
TMEM260-205ENST00000554981 CACNB1Q02641 598 aaPredicted RBP10.77□□□□□ -0.69
TMEM260-205ENST00000554981 KIF21AQ7Z4S6 1674 aa10.74□□□□□ -0.69
TMEM260-205ENST00000554981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.74□□□□□ -0.69
TMEM260-205ENST00000554981 HNRNPUL2Q1KMD3 747 aaKnown RBP10.74□□□□□ -0.69
TMEM260-205ENST00000554981 ATAD2BQ9ULI0 1458 aa10.74□□□□□ -0.69
TMEM260-205ENST00000554981 ATXN8OSP0DMR3 200 aa10.71□□□□□ -0.69
TMEM260-205ENST00000554981 C1QBPQ07021 282 aaKnown RBP10.71□□□□□ -0.69
TMEM260-205ENST00000554981 U3KPZ7 1027 aaPredicted RBP10.71□□□□□ -0.69
TMEM260-205ENST00000554981 BAZ1AQ9NRL2 1556 aaPredicted RBP10.69□□□□□ -0.7
TMEM260-205ENST00000554981 SAMD1Q6SPF0 538 aaPredicted RBP10.69□□□□□ -0.7
TMEM260-205ENST00000554981 HMGXB3Q12766 1538 aa10.68□□□□□ -0.7
TMEM260-205ENST00000554981 LAMC3Q9Y6N6 1575 aa10.65□□□□□ -0.7
TMEM260-205ENST00000554981 OSCARQ8IYS5 282 aa10.65□□□□□ -0.7
TMEM260-205ENST00000554981 PDS5BQ9NTI5 1447 aa10.62□□□□□ -0.71
TMEM260-205ENST00000554981 RIMBP3CA6NJZ7 1639 aa10.62□□□□□ -0.71
TMEM260-205ENST00000554981 RIMBP3BA6NNM3 1639 aa10.62□□□□□ -0.71
TMEM260-205ENST00000554981 RIMBP3Q9UFD9 1639 aa10.62□□□□□ -0.71
TMEM260-205ENST00000554981 APLP2Q06481 763 aa10.61□□□□□ -0.71
TMEM260-205ENST00000554981 BAZ1BQ9UIG0 1483 aaKnown RBP10.61□□□□□ -0.71
TMEM260-205ENST00000554981 SMARCA4P51532 1647 aa10.6□□□□□ -0.71
TMEM260-205ENST00000554981 MRC2Q9UBG0 1479 aa10.58□□□□□ -0.72
TMEM260-205ENST00000554981 WDR62O43379 1518 aa10.57□□□□□ -0.72
TMEM260-205ENST00000554981 TRHP20396 242 aaPredicted RBP10.56□□□□□ -0.72
TMEM260-205ENST00000554981 ATF5Q9Y2D1 282 aaPredicted RBP10.52□□□□□ -0.73
TMEM260-205ENST00000554981 ARHGEF11O15085 1522 aa10.51□□□□□ -0.73
TMEM260-205ENST00000554981 MROH2BQ7Z745 1585 aa10.49□□□□□ -0.73
TMEM260-205ENST00000554981 CYB5RLQ6IPT4 315 aa10.49□□□□□ -0.73
TMEM260-205ENST00000554981 CADPSQ9ULU8 1353 aa10.48□□□□□ -0.73
TMEM260-205ENST00000554981 PEG3Q9GZU2 1588 aa10.44□□□□□ -0.74
TMEM260-205ENST00000554981 CEP164Q9UPV0 1460 aa10.43□□□□□ -0.74
TMEM260-205ENST00000554981 CAPN15O75808 1086 aa10.4□□□□□ -0.74
TMEM260-205ENST00000554981 WIZO95785 1651 aa10.4□□□□□ -0.74
TMEM260-205ENST00000554981 ARAP1Q96P48 1450 aa10.39□□□□□ -0.75
TMEM260-205ENST00000554981 ZNF219Q9P2Y4 722 aaPredicted RBP10.39□□□□□ -0.75
TMEM260-205ENST00000554981 FANCD2Q9BXW9 1451 aa10.38□□□□□ -0.75
TMEM260-205ENST00000554981 SPINK5Q9NQ38 1064 aaPredicted RBP10.37□□□□□ -0.75
TMEM260-205ENST00000554981 URB2Q14146 1524 aaKnown RBP10.35□□□□□ -0.75
TMEM260-205ENST00000554981 ZNF608Q9ULD9 1512 aaPredicted RBP10.34□□□□□ -0.75
TMEM260-205ENST00000554981 ILDR1Q86SU0 546 aaPredicted RBP10.3□□□□□ -0.76
TMEM260-205ENST00000554981 RSF1Q96T23 1441 aaPredicted RBP10.28□□□□□ -0.76
TMEM260-205ENST00000554981 CHD1O14646 1710 aa10.27□□□□□ -0.76
TMEM260-205ENST00000554981 POLA2Q14181 598 aa10.25□□□□□ -0.77
TMEM260-205ENST00000554981 TOP2AP11388 1531 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms