RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NISCHQ9Y2I1 1504 aa9.31□□□□□ -0.92
LIMA1-214ENST00000552783 AEBP2Q6ZN18 517 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-214ENST00000552783 CHIC1Q5VXU3 224 aa8.71□□□□□ -1.02
LIMA1-214ENST00000552783 SHROOM4Q9ULL8 1493 aa8.35□□□□□ -1.07
LIMA1-214ENST00000552783 SUPT5HO00267 1087 aaKnown RBP8.28□□□□□ -1.08
LIMA1-214ENST00000552783 DCAF8L2P0C7V8 631 aa8.27□□□□□ -1.09
LIMA1-214ENST00000552783 HRCP23327 699 aa8.25□□□□□ -1.09
LIMA1-214ENST00000552783 PPARGC1BQ86YN6 1023 aaKnown RBP8.22□□□□□ -1.09
LIMA1-214ENST00000552783 MYO15BQ96JP2 1530 aa8.2□□□□□ -1.1
LIMA1-214ENST00000552783 PCGF6Q9BYE7 350 aa8.17□□□□□ -1.1
LIMA1-214ENST00000552783 LOC105371045A0A1W2PR82 267 aa7.99□□□□□ -1.13
LIMA1-214ENST00000552783 ZCCHC6Q5VYS8 1495 aaKnown RBP7.91□□□□□ -1.14
LIMA1-214ENST00000552783 CCDC180Q9P1Z9 1646 aa7.88□□□□□ -1.15
LIMA1-214ENST00000552783 DCAF1Q9Y4B6 1507 aa7.86□□□□□ -1.15
LIMA1-214ENST00000552783 SCAF1Q9H7N4 1312 aaKnown RBP7.85□□□□□ -1.15
LIMA1-214ENST00000552783 TRIM26Q12899 539 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-214ENST00000552783 EHMT2Q96KQ7 1210 aa7.76□□□□□ -1.17
LIMA1-214ENST00000552783 SENP3Q9H4L4 574 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-214ENST00000552783 PELP1Q8IZL8 1130 aaKnown RBP7.72□□□□□ -1.17
LIMA1-214ENST00000552783 FAM9AQ8IZU1 332 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-214ENST00000552783 ZEB1P37275 1124 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-214ENST00000552783 ABCC9O60706 1549 aa7.65□□□□□ -1.19
LIMA1-214ENST00000552783 NEUROD1Q13562 356 aa7.64□□□□□ -1.19
LIMA1-214ENST00000552783 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-214ENST00000552783 TRIM41Q8WV44 630 aa7.59□□□□□ -1.19
LIMA1-214ENST00000552783 ACIN1Q9UKV3 1341 aaKnown RBP7.59□□□□□ -1.19
LIMA1-214ENST00000552783 PHF23Q9BUL5 403 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-214ENST00000552783 GTF3C3Q9Y5Q9 886 aa7.57□□□□□ -1.2
LIMA1-214ENST00000552783 RSF1Q96T23 1441 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-214ENST00000552783 RB1CC1Q8TDY2 1594 aa7.51□□□□□ -1.21
LIMA1-214ENST00000552783 CCER1Q8TC90 406 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-214ENST00000552783 TTBK1Q5TCY1 1321 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-214ENST00000552783 DIEXFQ68CQ4 756 aaKnown RBP7.5□□□□□ -1.21
LIMA1-214ENST00000552783 YTHDC1Q96MU7 727 aaKnown RBP7.44□□□□□ -1.22
LIMA1-214ENST00000552783 SCRIBQ14160 1630 aa7.43□□□□□ -1.22
LIMA1-214ENST00000552783 CENPBP07199 599 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-214ENST00000552783 NACADO15069 1562 aa7.4□□□□□ -1.23
LIMA1-214ENST00000552783 CECR2Q9BXF3 1484 aa7.37□□□□□ -1.23
LIMA1-214ENST00000552783 MIER1Q8N108 512 aa7.36□□□□□ -1.23
LIMA1-214ENST00000552783 ZNF316A6NFI3 1004 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-214ENST00000552783 MYT1Q01538 1121 aa7.33□□□□□ -1.24
LIMA1-214ENST00000552783 MROH2BQ7Z745 1585 aa7.33□□□□□ -1.24
LIMA1-214ENST00000552783 RANGAP1P46060 587 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-214ENST00000552783 WIZO95785 1651 aa7.31□□□□□ -1.24
LIMA1-214ENST00000552783 CCDC88BA6NC98 1476 aa7.28□□□□□ -1.24
LIMA1-214ENST00000552783 CEP162Q5TB80 1403 aa7.28□□□□□ -1.24
LIMA1-214ENST00000552783 ABCC8Q09428 1581 aa7.27□□□□□ -1.24
LIMA1-214ENST00000552783 UBTFP17480 764 aaKnown RBP7.27□□□□□ -1.25
LIMA1-214ENST00000552783 HNRNPUL2Q1KMD3 747 aaKnown RBP7.27□□□□□ -1.25
LIMA1-214ENST00000552783 SOGA1O94964 1423 aa7.27□□□□□ -1.25
LIMA1-214ENST00000552783 PABPN1Q86U42 306 aaKnown RBP eCLIP7.26□□□□□ -1.25
LIMA1-214ENST00000552783 WRNQ14191 1432 aaPredicted RBP eCLIP7.26□□□□□ -1.25
LIMA1-214ENST00000552783 EIF4G1Q04637 1599 aaKnown RBP7.25□□□□□ -1.25
LIMA1-214ENST00000552783 RUSC2Q8N2Y8 1516 aa7.25□□□□□ -1.25
LIMA1-214ENST00000552783 UNC13AQ9UPW8 1703 aa7.22□□□□□ -1.25
LIMA1-214ENST00000552783 SUPT16HQ9Y5B9 1047 aaKnown RBP7.2□□□□□ -1.26
LIMA1-214ENST00000552783 TNIKQ9UKE5 1360 aa7.19□□□□□ -1.26
LIMA1-214ENST00000552783 BICRAQ9NZM4 1560 aa7.18□□□□□ -1.26
LIMA1-214ENST00000552783 CSRNP3Q8WYN3 585 aa7.18□□□□□ -1.26
LIMA1-214ENST00000552783 BAZ1AQ9NRL2 1556 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-214ENST00000552783 TSHZ2Q9NRE2 1034 aa7.17□□□□□ -1.26
LIMA1-214ENST00000552783 APLP2Q06481 763 aa7.16□□□□□ -1.26
LIMA1-214ENST00000552783 KCNH8Q96L42 1107 aa7.16□□□□□ -1.26
LIMA1-214ENST00000552783 FOXD1Q16676 465 aa7.13□□□□□ -1.27
LIMA1-214ENST00000552783 BCANQ96GW7 911 aa7.11□□□□□ -1.27
LIMA1-214ENST00000552783 ANP32EQ9BTT0 268 aa7.1□□□□□ -1.27
LIMA1-214ENST00000552783 SMARCA2P51531 1590 aa7.1□□□□□ -1.27
LIMA1-214ENST00000552783 GOLGA3Q08378 1498 aa7.1□□□□□ -1.27
LIMA1-214ENST00000552783 BCL11AQ9H165 835 aa7.09□□□□□ -1.27
LIMA1-214ENST00000552783 CLIP1P30622 1438 aa7.09□□□□□ -1.27
LIMA1-214ENST00000552783 TOP2AP11388 1531 aaKnown RBP7.08□□□□□ -1.28
LIMA1-214ENST00000552783 DHX57Q6P158 1386 aaKnown RBP7.08□□□□□ -1.28
LIMA1-214ENST00000552783 VPS8Q8N3P4 1428 aa7.05□□□□□ -1.28
LIMA1-214ENST00000552783 KANK4Q5T7N3 995 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-214ENST00000552783 EEA1Q15075 1411 aa7.05□□□□□ -1.28
LIMA1-214ENST00000552783 ITGAEP38570 1179 aa7.05□□□□□ -1.28
LIMA1-214ENST00000552783 RAPGEF2Q9Y4G8 1499 aa7.04□□□□□ -1.28
LIMA1-214ENST00000552783 ATP1B4Q9UN42 357 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-214ENST00000552783 SMARCA4P51532 1647 aa7.03□□□□□ -1.28
LIMA1-214ENST00000552783 SYNJ1O43426 1573 aa7.02□□□□□ -1.28
LIMA1-214ENST00000552783 FKBP8Q14318 412 aa7.02□□□□□ -1.29
LIMA1-214ENST00000552783 DNAJC5BQ9UF47 199 aa7.02□□□□□ -1.29
LIMA1-214ENST00000552783 KIF21BO75037 1637 aa7.02□□□□□ -1.29
LIMA1-214ENST00000552783 CEP164Q9UPV0 1460 aa7.02□□□□□ -1.29
LIMA1-214ENST00000552783 CLSPNQ9HAW4 1339 aa7□□□□□ -1.29
LIMA1-214ENST00000552783 RBM19Q9Y4C8 960 aaKnown RBP6.99□□□□□ -1.29
LIMA1-214ENST00000552783 HIRIP3Q9BW71 556 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-214ENST00000552783 MSH5O43196 834 aa6.98□□□□□ -1.29
LIMA1-214ENST00000552783 DDX10Q13206 875 aaKnown RBP6.98□□□□□ -1.29
LIMA1-214ENST00000552783 TRIM52Q96A61 297 aa6.97□□□□□ -1.29
LIMA1-214ENST00000552783 PLPPR3Q6T4P5 718 aa6.97□□□□□ -1.29
LIMA1-214ENST00000552783 ARAP1Q96P48 1450 aa6.95□□□□□ -1.3
LIMA1-214ENST00000552783 SIN3AQ96ST3 1273 aa6.95□□□□□ -1.3
LIMA1-214ENST00000552783 CC2D2AQ9P2K1 1620 aa6.94□□□□□ -1.3
LIMA1-214ENST00000552783 BAZ1BQ9UIG0 1483 aaKnown RBP6.93□□□□□ -1.3
LIMA1-214ENST00000552783 MAPKBP1O60336 1514 aa6.93□□□□□ -1.3
LIMA1-214ENST00000552783 WDR97A6NE52 1622 aa6.92□□□□□ -1.3
LIMA1-214ENST00000552783 RRBP1Q9P2E9 1410 aaKnown RBP6.92□□□□□ -1.3
LIMA1-214ENST00000552783 RAB3GAP2Q9H2M9 1393 aa6.91□□□□□ -1.3
LIMA1-214ENST00000552783 PPP1R15AO75807 674 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms