RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
LIMA1-213ENST00000552720 AEBP2Q6ZN18 517 aaPredicted RBP14.17□□□□□ -0.14
LIMA1-213ENST00000552720 CHIC1Q5VXU3 224 aa13.57□□□□□ -0.24
LIMA1-213ENST00000552720 SHROOM4Q9ULL8 1493 aa13.34□□□□□ -0.27
LIMA1-213ENST00000552720 CCDC180Q9P1Z9 1646 aa13.12□□□□□ -0.31
LIMA1-213ENST00000552720 ZCCHC6Q5VYS8 1495 aaKnown RBP13.09□□□□□ -0.31
LIMA1-213ENST00000552720 SUPT5HO00267 1087 aaKnown RBP13.07□□□□□ -0.32
LIMA1-213ENST00000552720 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
LIMA1-213ENST00000552720 MYO15BQ96JP2 1530 aa12.74□□□□□ -0.37
LIMA1-213ENST00000552720 DCAF1Q9Y4B6 1507 aa12.62□□□□□ -0.39
LIMA1-213ENST00000552720 PCGF6Q9BYE7 350 aa12.39□□□□□ -0.43
LIMA1-213ENST00000552720 SCRIBQ14160 1630 aa12.39□□□□□ -0.43
LIMA1-213ENST00000552720 ABCC9O60706 1549 aa12.39□□□□□ -0.43
LIMA1-213ENST00000552720 LOC105371045A0A1W2PR82 267 aa12.38□□□□□ -0.43
LIMA1-213ENST00000552720 HRCP23327 699 aa12.38□□□□□ -0.43
LIMA1-213ENST00000552720 RSF1Q96T23 1441 aaPredicted RBP12.27□□□□□ -0.45
LIMA1-213ENST00000552720 PHF23Q9BUL5 403 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-213ENST00000552720 PPARGC1BQ86YN6 1023 aaKnown RBP12.23□□□□□ -0.45
LIMA1-213ENST00000552720 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
LIMA1-213ENST00000552720 CECR2Q9BXF3 1484 aa12.12□□□□□ -0.47
LIMA1-213ENST00000552720 TRIM41Q8WV44 630 aa12.12□□□□□ -0.47
LIMA1-213ENST00000552720 FAM9AQ8IZU1 332 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-213ENST00000552720 NACADO15069 1562 aa12.09□□□□□ -0.47
LIMA1-213ENST00000552720 MROH2BQ7Z745 1585 aa12.08□□□□□ -0.48
LIMA1-213ENST00000552720 TRIM26Q12899 539 aaPredicted RBP12.07□□□□□ -0.48
LIMA1-213ENST00000552720 EHMT2Q96KQ7 1210 aa12.06□□□□□ -0.48
LIMA1-213ENST00000552720 WIZO95785 1651 aa12.06□□□□□ -0.48
LIMA1-213ENST00000552720 BAZ1AQ9NRL2 1556 aaPredicted RBP11.91□□□□□ -0.5
LIMA1-213ENST00000552720 EIF4G1Q04637 1599 aaKnown RBP11.88□□□□□ -0.51
LIMA1-213ENST00000552720 UNC13AQ9UPW8 1703 aa11.88□□□□□ -0.51
LIMA1-213ENST00000552720 SENP3Q9H4L4 574 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-213ENST00000552720 ABCC8Q09428 1581 aa11.81□□□□□ -0.52
LIMA1-213ENST00000552720 SMARCA4P51532 1647 aa11.8□□□□□ -0.52
LIMA1-213ENST00000552720 TOP2AP11388 1531 aaKnown RBP11.78□□□□□ -0.52
LIMA1-213ENST00000552720 ZEB1P37275 1124 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-213ENST00000552720 CCDC88BA6NC98 1476 aa11.76□□□□□ -0.53
LIMA1-213ENST00000552720 SMARCA2P51531 1590 aa11.76□□□□□ -0.53
LIMA1-213ENST00000552720 SOGA1O94964 1423 aa11.68□□□□□ -0.54
LIMA1-213ENST00000552720 TTBK1Q5TCY1 1321 aaPredicted RBP11.67□□□□□ -0.54
LIMA1-213ENST00000552720 PABPN1Q86U42 306 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMA1-213ENST00000552720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.66□□□□□ -0.54
LIMA1-213ENST00000552720 RUSC2Q8N2Y8 1516 aa11.65□□□□□ -0.54
LIMA1-213ENST00000552720 BICRAQ9NZM4 1560 aa11.64□□□□□ -0.55
LIMA1-213ENST00000552720 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
LIMA1-213ENST00000552720 CCER1Q8TC90 406 aaPredicted RBP11.58□□□□□ -0.56
LIMA1-213ENST00000552720 WRNQ14191 1432 aaPredicted RBP eCLIP11.56□□□□□ -0.56
LIMA1-213ENST00000552720 CSRNP3Q8WYN3 585 aa11.55□□□□□ -0.56
LIMA1-213ENST00000552720 TNIKQ9UKE5 1360 aa11.55□□□□□ -0.56
LIMA1-213ENST00000552720 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
LIMA1-213ENST00000552720 SYNJ1O43426 1573 aa11.52□□□□□ -0.56
LIMA1-213ENST00000552720 PEG3Q9GZU2 1588 aa11.51□□□□□ -0.57
LIMA1-213ENST00000552720 EEA1Q15075 1411 aa11.5□□□□□ -0.57
LIMA1-213ENST00000552720 SCAF1Q9H7N4 1312 aaKnown RBP11.49□□□□□ -0.57
LIMA1-213ENST00000552720 GOLGA3Q08378 1498 aa11.48□□□□□ -0.57
LIMA1-213ENST00000552720 ATAD2BQ9ULI0 1458 aa11.45□□□□□ -0.58
LIMA1-213ENST00000552720 BAZ1BQ9UIG0 1483 aaKnown RBP11.43□□□□□ -0.58
LIMA1-213ENST00000552720 KIF21BO75037 1637 aa11.41□□□□□ -0.58
LIMA1-213ENST00000552720 CEP164Q9UPV0 1460 aa11.4□□□□□ -0.58
LIMA1-213ENST00000552720 RANGAP1P46060 587 aaPredicted RBP11.4□□□□□ -0.59
LIMA1-213ENST00000552720 DIEXFQ68CQ4 756 aaKnown RBP11.38□□□□□ -0.59
LIMA1-213ENST00000552720 RAPGEF2Q9Y4G8 1499 aa11.38□□□□□ -0.59
LIMA1-213ENST00000552720 CLIP1P30622 1438 aa11.37□□□□□ -0.59
LIMA1-213ENST00000552720 HNRNPUL2Q1KMD3 747 aaKnown RBP11.36□□□□□ -0.59
LIMA1-213ENST00000552720 PLPPR3Q6T4P5 718 aa11.35□□□□□ -0.59
LIMA1-213ENST00000552720 NEUROD1Q13562 356 aa11.34□□□□□ -0.59
LIMA1-213ENST00000552720 TOP2BQ02880 1626 aa11.33□□□□□ -0.6
LIMA1-213ENST00000552720 VPS8Q8N3P4 1428 aa11.32□□□□□ -0.6
LIMA1-213ENST00000552720 ACIN1Q9UKV3 1341 aaKnown RBP11.31□□□□□ -0.6
LIMA1-213ENST00000552720 BIVM-ERCC5R4GMW8 1640 aa11.3□□□□□ -0.6
LIMA1-213ENST00000552720 ZNF316A6NFI3 1004 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-213ENST00000552720 APLP2Q06481 763 aa11.25□□□□□ -0.61
LIMA1-213ENST00000552720 CUX1P39880 1505 aa11.23□□□□□ -0.61
LIMA1-213ENST00000552720 GTF3C3Q9Y5Q9 886 aa11.22□□□□□ -0.61
LIMA1-213ENST00000552720 ARAP1Q96P48 1450 aa11.21□□□□□ -0.62
LIMA1-213ENST00000552720 PRXQ9BXM0 1461 aa11.21□□□□□ -0.62
LIMA1-213ENST00000552720 ERICH3Q5RHP9 1530 aa11.2□□□□□ -0.62
LIMA1-213ENST00000552720 HMGXB3Q12766 1538 aa11.19□□□□□ -0.62
LIMA1-213ENST00000552720 CENPBP07199 599 aaPredicted RBP11.19□□□□□ -0.62
LIMA1-213ENST00000552720 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
LIMA1-213ENST00000552720 KANK4Q5T7N3 995 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-213ENST00000552720 YTHDC1Q96MU7 727 aaKnown RBP11.18□□□□□ -0.62
LIMA1-213ENST00000552720 FOXD1Q16676 465 aa11.17□□□□□ -0.62
LIMA1-213ENST00000552720 KCNA4P22459 653 aa11.16□□□□□ -0.62
LIMA1-213ENST00000552720 MIER1Q8N108 512 aa11.16□□□□□ -0.62
LIMA1-213ENST00000552720 CFTRP13569 1480 aa11.13□□□□□ -0.63
LIMA1-213ENST00000552720 PELP1Q8IZL8 1130 aaKnown RBP11.13□□□□□ -0.63
LIMA1-213ENST00000552720 KIF27Q86VH2 1401 aa11.13□□□□□ -0.63
LIMA1-213ENST00000552720 PRDM2Q13029 1718 aa11.11□□□□□ -0.63
LIMA1-213ENST00000552720 DHX57Q6P158 1386 aaKnown RBP11.1□□□□□ -0.63
LIMA1-213ENST00000552720 ARHGAP35Q9NRY4 1499 aa11.1□□□□□ -0.63
LIMA1-213ENST00000552720 CUX2O14529 1486 aa11.06□□□□□ -0.64
LIMA1-213ENST00000552720 ITGAEP38570 1179 aa11.06□□□□□ -0.64
LIMA1-213ENST00000552720 RRBP1Q9P2E9 1410 aaKnown RBP11.05□□□□□ -0.64
LIMA1-213ENST00000552720 IGF1RP08069 1367 aa11.03□□□□□ -0.64
LIMA1-213ENST00000552720 CCNB3Q8WWL7 1395 aa11.02□□□□□ -0.65
LIMA1-213ENST00000552720 FGD5Q6ZNL6 1462 aa11.01□□□□□ -0.65
LIMA1-213ENST00000552720 CLSPNQ9HAW4 1339 aa11□□□□□ -0.65
LIMA1-213ENST00000552720 CADPSQ9ULU8 1353 aa10.99□□□□□ -0.65
LIMA1-213ENST00000552720 TIAM1Q13009 1591 aa10.99□□□□□ -0.65
LIMA1-213ENST00000552720 CARMIL1Q5VZK9 1371 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms