RNA–Protein interactions for RNA: ENST00000550716.1

ATP2B1-207, Transcript of ATPase plasma membrane Ca2+ transporting 1, humanhuman

TSL 1 (best)

Gene ATP2B1, Length 486 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2B1-207ENST00000550716 AEBP2Q6ZN18 517 aaPredicted RBP28.4■■■□□ 2.14
ATP2B1-207ENST00000550716 CHIC1Q5VXU3 224 aa27.5■■□□□ 1.99
ATP2B1-207ENST00000550716 SENP3Q9H4L4 574 aaPredicted RBP24.15■■□□□ 1.46
ATP2B1-207ENST00000550716 PHF23Q9BUL5 403 aaPredicted RBP24.14■■□□□ 1.45
ATP2B1-207ENST00000550716 FOXD1Q16676 465 aa22.44■■□□□ 1.18
ATP2B1-207ENST00000550716 PLPPR3Q6T4P5 718 aa22.23■■□□□ 1.15
ATP2B1-207ENST00000550716 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
ATP2B1-207ENST00000550716 ADRA2BP18089 450 aa21.37■■□□□ 1.01
ATP2B1-207ENST00000550716 PPP6R1Q9UPN7 881 aa21.37■■□□□ 1.01
ATP2B1-207ENST00000550716 PIAS4Q8N2W9 510 aaPredicted RBP21.15■□□□□ 0.98
ATP2B1-207ENST00000550716 MSH5O43196 834 aa20.8■□□□□ 0.92
ATP2B1-207ENST00000550716 ABCC9O60706 1549 aa19.92■□□□□ 0.78
ATP2B1-207ENST00000550716 CCDC180Q9P1Z9 1646 aa19.74■□□□□ 0.75
ATP2B1-207ENST00000550716 PPP4R3CPQ6ZMV5 832 aa19.55■□□□□ 0.72
ATP2B1-207ENST00000550716 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
ATP2B1-207ENST00000550716 MAPK8IP2Q13387 824 aaPredicted RBP19.45■□□□□ 0.7
ATP2B1-207ENST00000550716 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
ATP2B1-207ENST00000550716 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
ATP2B1-207ENST00000550716 CNKSR2Q8WXI2 1034 aa19.05■□□□□ 0.64
ATP2B1-207ENST00000550716 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
ATP2B1-207ENST00000550716 KCNA4P22459 653 aa18.85■□□□□ 0.61
ATP2B1-207ENST00000550716 RB1CC1Q8TDY2 1594 aa18.84■□□□□ 0.61
ATP2B1-207ENST00000550716 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
ATP2B1-207ENST00000550716 RNF216Q9NWF9 866 aaPredicted RBP18.74■□□□□ 0.59
ATP2B1-207ENST00000550716 HOXD11P31277 338 aaPredicted RBP18.72■□□□□ 0.59
ATP2B1-207ENST00000550716 NPM3O75607 178 aaKnown RBP18.7■□□□□ 0.58
ATP2B1-207ENST00000550716 NACADO15069 1562 aa18.68■□□□□ 0.58
ATP2B1-207ENST00000550716 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
ATP2B1-207ENST00000550716 PABPN1Q86U42 306 aaKnown RBP eCLIP18.54■□□□□ 0.56
ATP2B1-207ENST00000550716 DCAF8L1A6NGE4 600 aa18.49■□□□□ 0.55
ATP2B1-207ENST00000550716 UNC13AQ9UPW8 1703 aa18.42■□□□□ 0.54
ATP2B1-207ENST00000550716 MYO15BQ96JP2 1530 aa18.4■□□□□ 0.54
ATP2B1-207ENST00000550716 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
ATP2B1-207ENST00000550716 ZCCHC6Q5VYS8 1495 aaKnown RBP18.27■□□□□ 0.52
ATP2B1-207ENST00000550716 DCAF1Q9Y4B6 1507 aa18.16■□□□□ 0.5
ATP2B1-207ENST00000550716 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
ATP2B1-207ENST00000550716 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
ATP2B1-207ENST00000550716 CC2D2AQ9P2K1 1620 aa17.94■□□□□ 0.46
ATP2B1-207ENST00000550716 CECR2Q9BXF3 1484 aa17.92■□□□□ 0.46
ATP2B1-207ENST00000550716 SLC4A1APQ9BWU0 796 aaKnown RBP17.91■□□□□ 0.46
ATP2B1-207ENST00000550716 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
ATP2B1-207ENST00000550716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.88■□□□□ 0.45
ATP2B1-207ENST00000550716 RNF39Q9H2S5 420 aa17.78■□□□□ 0.44
ATP2B1-207ENST00000550716 SLC4A2P04920 1241 aa17.71■□□□□ 0.43
ATP2B1-207ENST00000550716 U3KPZ7 1027 aaPredicted RBP17.57■□□□□ 0.4
ATP2B1-207ENST00000550716 C1QBPQ07021 282 aaKnown RBP17.54■□□□□ 0.4
ATP2B1-207ENST00000550716 CACNB1Q02641 598 aaPredicted RBP17.53■□□□□ 0.4
ATP2B1-207ENST00000550716 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
ATP2B1-207ENST00000550716 ZBTB22O15209 634 aa17.34■□□□□ 0.37
ATP2B1-207ENST00000550716 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
ATP2B1-207ENST00000550716 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
ATP2B1-207ENST00000550716 ATAD2BQ9ULI0 1458 aa17.25■□□□□ 0.35
ATP2B1-207ENST00000550716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
ATP2B1-207ENST00000550716 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
ATP2B1-207ENST00000550716 DNAJC5Q9H3Z4 198 aa17.2■□□□□ 0.34
ATP2B1-207ENST00000550716 SMARCA4P51532 1647 aa17.2■□□□□ 0.34
ATP2B1-207ENST00000550716 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
ATP2B1-207ENST00000550716 EHMT2Q96KQ7 1210 aa17.17■□□□□ 0.34
ATP2B1-207ENST00000550716 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
ATP2B1-207ENST00000550716 HMGXB3Q12766 1538 aa17.15■□□□□ 0.34
ATP2B1-207ENST00000550716 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
ATP2B1-207ENST00000550716 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
ATP2B1-207ENST00000550716 APLP2Q06481 763 aa17.13■□□□□ 0.33
ATP2B1-207ENST00000550716 CAPN15O75808 1086 aa17.12■□□□□ 0.33
ATP2B1-207ENST00000550716 CUX2O14529 1486 aa17.12■□□□□ 0.33
ATP2B1-207ENST00000550716 NESP48681 1621 aa17.11■□□□□ 0.33
ATP2B1-207ENST00000550716 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.32
ATP2B1-207ENST00000550716 BAZ1BQ9UIG0 1483 aaKnown RBP17.05■□□□□ 0.32
ATP2B1-207ENST00000550716 MROH2BQ7Z745 1585 aa17.02■□□□□ 0.32
ATP2B1-207ENST00000550716 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.31
ATP2B1-207ENST00000550716 CSRNP3Q8WYN3 585 aa17.01■□□□□ 0.31
ATP2B1-207ENST00000550716 TRHP20396 242 aaPredicted RBP16.98■□□□□ 0.31
ATP2B1-207ENST00000550716 ZNF219Q9P2Y4 722 aaPredicted RBP16.95■□□□□ 0.3
ATP2B1-207ENST00000550716 THOC2Q8NI27 1593 aaKnown RBP16.91■□□□□ 0.3
ATP2B1-207ENST00000550716 LAMC3Q9Y6N6 1575 aa16.87■□□□□ 0.29
ATP2B1-207ENST00000550716 DSG3P32926 999 aa16.84■□□□□ 0.29
ATP2B1-207ENST00000550716 ATF5Q9Y2D1 282 aaPredicted RBP16.84■□□□□ 0.29
ATP2B1-207ENST00000550716 KIF21AQ7Z4S6 1674 aa16.81■□□□□ 0.28
ATP2B1-207ENST00000550716 WIZO95785 1651 aa16.78■□□□□ 0.28
ATP2B1-207ENST00000550716 ABCB7O75027 752 aa16.78■□□□□ 0.28
ATP2B1-207ENST00000550716 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
ATP2B1-207ENST00000550716 ATXN8OSP0DMR3 200 aa16.77■□□□□ 0.28
ATP2B1-207ENST00000550716 CADPSQ9ULU8 1353 aa16.77■□□□□ 0.27
ATP2B1-207ENST00000550716 MRC2Q9UBG0 1479 aa16.68■□□□□ 0.26
ATP2B1-207ENST00000550716 WDR62O43379 1518 aa16.65■□□□□ 0.26
ATP2B1-207ENST00000550716 RSF1Q96T23 1441 aaPredicted RBP16.63■□□□□ 0.25
ATP2B1-207ENST00000550716 POLA2Q14181 598 aa16.6■□□□□ 0.25
ATP2B1-207ENST00000550716 FANCD2Q9BXW9 1451 aa16.59■□□□□ 0.25
ATP2B1-207ENST00000550716 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
ATP2B1-207ENST00000550716 TOP2AP11388 1531 aaKnown RBP16.56■□□□□ 0.24
ATP2B1-207ENST00000550716 CFTRP13569 1480 aa16.56■□□□□ 0.24
ATP2B1-207ENST00000550716 URB2Q14146 1524 aaKnown RBP16.49■□□□□ 0.23
ATP2B1-207ENST00000550716 TRIM41Q8WV44 630 aa16.45■□□□□ 0.22
ATP2B1-207ENST00000550716 CCDC88BA6NC98 1476 aa16.39■□□□□ 0.21
ATP2B1-207ENST00000550716 ZBTB12Q9Y330 459 aaPredicted RBP16.32■□□□□ 0.2
ATP2B1-207ENST00000550716 ZNF608Q9ULD9 1512 aaPredicted RBP16.31■□□□□ 0.2
ATP2B1-207ENST00000550716 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
ATP2B1-207ENST00000550716 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
ATP2B1-207ENST00000550716 TOPBP1Q92547 1522 aa16.27■□□□□ 0.2
ATP2B1-207ENST00000550716 IFT140Q96RY7 1462 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms