RNA–Protein interactions for RNA: ENST00000550070.6

ERBB3-214, Transcript of erb-b2 receptor tyrosine kinase 3, humanhuman

TSL 1 (best)

Gene ERBB3, Length 2,729 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB3-214ENST00000550070 NISCHQ9Y2I1 1504 aa20.82■□□□□ 0.92
ERBB3-214ENST00000550070 SHROOM4Q9ULL8 1493 aa17.93■□□□□ 0.46
ERBB3-214ENST00000550070 SUPT5HO00267 1087 aaKnown RBP17.67■□□□□ 0.42
ERBB3-214ENST00000550070 ZCCHC6Q5VYS8 1495 aaKnown RBP17.64■□□□□ 0.41
ERBB3-214ENST00000550070 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.4
ERBB3-214ENST00000550070 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
ERBB3-214ENST00000550070 CHIC1Q5VXU3 224 aa17.27■□□□□ 0.36
ERBB3-214ENST00000550070 SLC24A1O60721 1099 aa17.26■□□□□ 0.35
ERBB3-214ENST00000550070 DCAF8L2P0C7V8 631 aa17.23■□□□□ 0.35
ERBB3-214ENST00000550070 HRCP23327 699 aa17.06■□□□□ 0.32
ERBB3-214ENST00000550070 ABCC9O60706 1549 aa17.06■□□□□ 0.32
ERBB3-214ENST00000550070 DCAF1Q9Y4B6 1507 aa17.05■□□□□ 0.32
ERBB3-214ENST00000550070 PCGF6Q9BYE7 350 aa16.94■□□□□ 0.3
ERBB3-214ENST00000550070 MYT1Q01538 1121 aa16.93■□□□□ 0.3
ERBB3-214ENST00000550070 PELP1Q8IZL8 1130 aaKnown RBP16.89■□□□□ 0.29
ERBB3-214ENST00000550070 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
ERBB3-214ENST00000550070 PPARGC1BQ86YN6 1023 aaKnown RBP16.72■□□□□ 0.27
ERBB3-214ENST00000550070 TTBK1Q5TCY1 1321 aaPredicted RBP16.6■□□□□ 0.25
ERBB3-214ENST00000550070 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
ERBB3-214ENST00000550070 SCRIBQ14160 1630 aa16.55■□□□□ 0.24
ERBB3-214ENST00000550070 TRIM26Q12899 539 aaPredicted RBP16.55■□□□□ 0.24
ERBB3-214ENST00000550070 RB1CC1Q8TDY2 1594 aa16.42■□□□□ 0.22
ERBB3-214ENST00000550070 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
ERBB3-214ENST00000550070 PRKCSHP14314 528 aaPredicted RBP16.39■□□□□ 0.21
ERBB3-214ENST00000550070 FAM9AQ8IZU1 332 aaPredicted RBP16.32■□□□□ 0.2
ERBB3-214ENST00000550070 CECR2Q9BXF3 1484 aa16.26■□□□□ 0.19
ERBB3-214ENST00000550070 ZEB1P37275 1124 aaPredicted RBP16.24■□□□□ 0.19
ERBB3-214ENST00000550070 NACADO15069 1562 aa16.24■□□□□ 0.19
ERBB3-214ENST00000550070 MROH2BQ7Z745 1585 aa16.22■□□□□ 0.19
ERBB3-214ENST00000550070 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
ERBB3-214ENST00000550070 EHMT2Q96KQ7 1210 aa16.2■□□□□ 0.18
ERBB3-214ENST00000550070 APLP2Q06481 763 aa16.17■□□□□ 0.18
ERBB3-214ENST00000550070 WIZO95785 1651 aa16.15■□□□□ 0.18
ERBB3-214ENST00000550070 DAXXQ9UER7 740 aaPredicted RBP16.12■□□□□ 0.17
ERBB3-214ENST00000550070 ERICH6Q7L0X2 663 aa16.1■□□□□ 0.17
ERBB3-214ENST00000550070 UNC13AQ9UPW8 1703 aa16.04■□□□□ 0.16
ERBB3-214ENST00000550070 BAZ1AQ9NRL2 1556 aaPredicted RBP16.03■□□□□ 0.16
ERBB3-214ENST00000550070 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
ERBB3-214ENST00000550070 BICRAQ9NZM4 1560 aa15.89■□□□□ 0.13
ERBB3-214ENST00000550070 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.88■□□□□ 0.13
ERBB3-214ENST00000550070 SCAF1Q9H7N4 1312 aaKnown RBP15.86■□□□□ 0.13
ERBB3-214ENST00000550070 ABCC8Q09428 1581 aa15.86■□□□□ 0.13
ERBB3-214ENST00000550070 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
ERBB3-214ENST00000550070 CCDC88BA6NC98 1476 aa15.84■□□□□ 0.13
ERBB3-214ENST00000550070 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
ERBB3-214ENST00000550070 SMARCA4P51532 1647 aa15.82■□□□□ 0.12
ERBB3-214ENST00000550070 SMARCA2P51531 1590 aa15.8■□□□□ 0.12
ERBB3-214ENST00000550070 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.12
ERBB3-214ENST00000550070 SOGA1O94964 1423 aa15.75■□□□□ 0.11
ERBB3-214ENST00000550070 CEP162Q5TB80 1403 aa15.75■□□□□ 0.11
ERBB3-214ENST00000550070 TNIKQ9UKE5 1360 aa15.7■□□□□ 0.1
ERBB3-214ENST00000550070 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
ERBB3-214ENST00000550070 CSRNP3Q8WYN3 585 aa15.66■□□□□ 0.1
ERBB3-214ENST00000550070 EEA1Q15075 1411 aa15.64■□□□□ 0.09
ERBB3-214ENST00000550070 ACIN1Q9UKV3 1341 aaKnown RBP15.63■□□□□ 0.09
ERBB3-214ENST00000550070 DIEXFQ68CQ4 756 aaKnown RBP15.63■□□□□ 0.09
ERBB3-214ENST00000550070 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
ERBB3-214ENST00000550070 NEUROD1Q13562 356 aa15.61■□□□□ 0.09
ERBB3-214ENST00000550070 GOLGA3Q08378 1498 aa15.57■□□□□ 0.08
ERBB3-214ENST00000550070 PEG3Q9GZU2 1588 aa15.49■□□□□ 0.07
ERBB3-214ENST00000550070 SYNJ1O43426 1573 aa15.48■□□□□ 0.07
ERBB3-214ENST00000550070 CENPBP07199 599 aaPredicted RBP15.47■□□□□ 0.07
ERBB3-214ENST00000550070 GTF3C3Q9Y5Q9 886 aa15.46■□□□□ 0.07
ERBB3-214ENST00000550070 ZNF316A6NFI3 1004 aaPredicted RBP15.46■□□□□ 0.07
ERBB3-214ENST00000550070 CEP164Q9UPV0 1460 aa15.45■□□□□ 0.06
ERBB3-214ENST00000550070 KIF21BO75037 1637 aa15.45■□□□□ 0.06
ERBB3-214ENST00000550070 DNAJC5BQ9UF47 199 aa15.41■□□□□ 0.06
ERBB3-214ENST00000550070 HNRNPUL2Q1KMD3 747 aaKnown RBP15.4■□□□□ 0.06
ERBB3-214ENST00000550070 CLIP1P30622 1438 aa15.4■□□□□ 0.06
ERBB3-214ENST00000550070 VPS8Q8N3P4 1428 aa15.36■□□□□ 0.05
ERBB3-214ENST00000550070 ATAD2BQ9ULI0 1458 aa15.36■□□□□ 0.05
ERBB3-214ENST00000550070 RAPGEF2Q9Y4G8 1499 aa15.34■□□□□ 0.05
ERBB3-214ENST00000550070 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
ERBB3-214ENST00000550070 MIER1Q8N108 512 aa15.29■□□□□ 0.04
ERBB3-214ENST00000550070 RANGAP1P46060 587 aaPredicted RBP15.28■□□□□ 0.04
ERBB3-214ENST00000550070 YTHDC1Q96MU7 727 aaKnown RBP15.28■□□□□ 0.04
ERBB3-214ENST00000550070 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.04
ERBB3-214ENST00000550070 BCL11AQ9H165 835 aa15.27■□□□□ 0.04
ERBB3-214ENST00000550070 CC2D2AQ9P2K1 1620 aa15.26■□□□□ 0.03
ERBB3-214ENST00000550070 TOP2BQ02880 1626 aa15.25■□□□□ 0.03
ERBB3-214ENST00000550070 EIF5BO60841 1220 aaKnown RBP15.25■□□□□ 0.03
ERBB3-214ENST00000550070 BIVM-ERCC5R4GMW8 1640 aa15.19■□□□□ 0.02
ERBB3-214ENST00000550070 ARAP1Q96P48 1450 aa15.15■□□□□ 0.02
ERBB3-214ENST00000550070 PRXQ9BXM0 1461 aa15.15■□□□□ 0.02
ERBB3-214ENST00000550070 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
ERBB3-214ENST00000550070 DHX57Q6P158 1386 aaKnown RBP15.13■□□□□ 0.01
ERBB3-214ENST00000550070 KANK4Q5T7N3 995 aaPredicted RBP15.12■□□□□ 0.01
ERBB3-214ENST00000550070 CLSPNQ9HAW4 1339 aa15.11■□□□□ 0.01
ERBB3-214ENST00000550070 PLPPR3Q6T4P5 718 aa15.1■□□□□ 0.01
ERBB3-214ENST00000550070 NCAPD3P42695 1498 aa15.08■□□□□ 0
ERBB3-214ENST00000550070 CUX1P39880 1505 aa15.07■□□□□ 0
ERBB3-214ENST00000550070 RRBP1Q9P2E9 1410 aaKnown RBP15.04■□□□□ -0
ERBB3-214ENST00000550070 RTN4Q9NQC3 1192 aaKnown RBP15.03■□□□□ -0
ERBB3-214ENST00000550070 KIF27Q86VH2 1401 aa15.02■□□□□ -0
ERBB3-214ENST00000550070 HMGXB3Q12766 1538 aa15.01□□□□□ -0.01
ERBB3-214ENST00000550070 ARHGAP35Q9NRY4 1499 aa14.99□□□□□ -0.01
ERBB3-214ENST00000550070 CUX2O14529 1486 aa14.98□□□□□ -0.01
ERBB3-214ENST00000550070 NESP48681 1621 aa14.97□□□□□ -0.01
ERBB3-214ENST00000550070 CCNB3Q8WWL7 1395 aa14.96□□□□□ -0.01
ERBB3-214ENST00000550070 CFTRP13569 1480 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 729 ms