RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CHIC1Q5VXU3 224 aa19.3■□□□□ 0.68
LIMA1-204ENST00000549064 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
LIMA1-204ENST00000549064 PHF23Q9BUL5 403 aaPredicted RBP17.1■□□□□ 0.33
LIMA1-204ENST00000549064 NISCHQ9Y2I1 1504 aa16.82■□□□□ 0.28
LIMA1-204ENST00000549064 SENP3Q9H4L4 574 aaPredicted RBP16.02■□□□□ 0.16
LIMA1-204ENST00000549064 PLPPR3Q6T4P5 718 aa15.96■□□□□ 0.15
LIMA1-204ENST00000549064 ABCC9O60706 1549 aa15.78■□□□□ 0.12
LIMA1-204ENST00000549064 CCDC180Q9P1Z9 1646 aa15.3■□□□□ 0.04
LIMA1-204ENST00000549064 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
LIMA1-204ENST00000549064 ADRA2BP18089 450 aa15.05■□□□□ -0
LIMA1-204ENST00000549064 PPP6R1Q9UPN7 881 aa14.88□□□□□ -0.03
LIMA1-204ENST00000549064 FOXD1Q16676 465 aa14.85□□□□□ -0.03
LIMA1-204ENST00000549064 RB1CC1Q8TDY2 1594 aa14.77□□□□□ -0.05
LIMA1-204ENST00000549064 KCNA4P22459 653 aa14.73□□□□□ -0.05
LIMA1-204ENST00000549064 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
LIMA1-204ENST00000549064 PABPN1Q86U42 306 aaKnown RBP eCLIP14.6□□□□□ -0.07
LIMA1-204ENST00000549064 NACADO15069 1562 aa14.54□□□□□ -0.08
LIMA1-204ENST00000549064 UNC13AQ9UPW8 1703 aa14.54□□□□□ -0.08
LIMA1-204ENST00000549064 DCAF8L2P0C7V8 631 aa14.41□□□□□ -0.1
LIMA1-204ENST00000549064 BICRAQ9NZM4 1560 aa14.4□□□□□ -0.1
LIMA1-204ENST00000549064 CC2D2AQ9P2K1 1620 aa14.23□□□□□ -0.13
LIMA1-204ENST00000549064 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
LIMA1-204ENST00000549064 DNAJC5Q9H3Z4 198 aa14.21□□□□□ -0.13
LIMA1-204ENST00000549064 PPP4R3CPQ6ZMV5 832 aa14.2□□□□□ -0.14
LIMA1-204ENST00000549064 PIAS4Q8N2W9 510 aaPredicted RBP14.18□□□□□ -0.14
LIMA1-204ENST00000549064 MYO15BQ96JP2 1530 aa14.15□□□□□ -0.14
LIMA1-204ENST00000549064 SLC4A1APQ9BWU0 796 aaKnown RBP14.12□□□□□ -0.15
LIMA1-204ENST00000549064 EIF4G1Q04637 1599 aaKnown RBP14.06□□□□□ -0.16
LIMA1-204ENST00000549064 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
LIMA1-204ENST00000549064 SHROOM4Q9ULL8 1493 aa14.04□□□□□ -0.16
LIMA1-204ENST00000549064 NCBP3Q53F19 620 aaKnown RBP13.97□□□□□ -0.17
LIMA1-204ENST00000549064 SCRIBQ14160 1630 aa13.97□□□□□ -0.17
LIMA1-204ENST00000549064 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
LIMA1-204ENST00000549064 NPM3O75607 178 aaKnown RBP13.84□□□□□ -0.19
LIMA1-204ENST00000549064 DCAF1Q9Y4B6 1507 aa13.82□□□□□ -0.2
LIMA1-204ENST00000549064 CUX2O14529 1486 aa13.71□□□□□ -0.21
LIMA1-204ENST00000549064 ERCC6Q03468 1493 aa13.61□□□□□ -0.23
LIMA1-204ENST00000549064 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
LIMA1-204ENST00000549064 ZBTB22O15209 634 aa13.57□□□□□ -0.24
LIMA1-204ENST00000549064 SCAF1Q9H7N4 1312 aaKnown RBP13.51□□□□□ -0.25
LIMA1-204ENST00000549064 TRIM41Q8WV44 630 aa13.46□□□□□ -0.25
LIMA1-204ENST00000549064 NESP48681 1621 aa13.44□□□□□ -0.26
LIMA1-204ENST00000549064 NCAPD3P42695 1498 aa13.42□□□□□ -0.26
LIMA1-204ENST00000549064 THOC2Q8NI27 1593 aaKnown RBP13.38□□□□□ -0.27
LIMA1-204ENST00000549064 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
LIMA1-204ENST00000549064 MSH5O43196 834 aa13.33□□□□□ -0.28
LIMA1-204ENST00000549064 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
LIMA1-204ENST00000549064 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
LIMA1-204ENST00000549064 SMARCA2P51531 1590 aa13.29□□□□□ -0.28
LIMA1-204ENST00000549064 FOXD4L1Q9NU39 408 aa13.29□□□□□ -0.28
LIMA1-204ENST00000549064 KIF21AQ7Z4S6 1674 aa13.27□□□□□ -0.29
LIMA1-204ENST00000549064 SMARCA4P51532 1647 aa13.25□□□□□ -0.29
LIMA1-204ENST00000549064 LAMC3Q9Y6N6 1575 aa13.2□□□□□ -0.3
LIMA1-204ENST00000549064 BAZ1BQ9UIG0 1483 aaKnown RBP13.19□□□□□ -0.3
LIMA1-204ENST00000549064 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
LIMA1-204ENST00000549064 BAZ1AQ9NRL2 1556 aaPredicted RBP13.12□□□□□ -0.31
LIMA1-204ENST00000549064 PDS5BQ9NTI5 1447 aa13.12□□□□□ -0.31
LIMA1-204ENST00000549064 PEG3Q9GZU2 1588 aa13.08□□□□□ -0.32
LIMA1-204ENST00000549064 MRC2Q9UBG0 1479 aa13.07□□□□□ -0.32
LIMA1-204ENST00000549064 WDR62O43379 1518 aa13.06□□□□□ -0.32
LIMA1-204ENST00000549064 MROH2BQ7Z745 1585 aa12.99□□□□□ -0.33
LIMA1-204ENST00000549064 CADPSQ9ULU8 1353 aa12.99□□□□□ -0.33
LIMA1-204ENST00000549064 OSCARQ8IYS5 282 aa12.99□□□□□ -0.33
LIMA1-204ENST00000549064 RIMBP3CA6NJZ7 1639 aa12.96□□□□□ -0.33
LIMA1-204ENST00000549064 RIMBP3BA6NNM3 1639 aa12.96□□□□□ -0.33
LIMA1-204ENST00000549064 RIMBP3Q9UFD9 1639 aa12.96□□□□□ -0.33
LIMA1-204ENST00000549064 CEP164Q9UPV0 1460 aa12.92□□□□□ -0.34
LIMA1-204ENST00000549064 DMRT2Q9Y5R5 561 aa12.92□□□□□ -0.34
LIMA1-204ENST00000549064 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
LIMA1-204ENST00000549064 HOXD11P31277 338 aaPredicted RBP12.91□□□□□ -0.34
LIMA1-204ENST00000549064 FANCD2Q9BXW9 1451 aa12.88□□□□□ -0.35
LIMA1-204ENST00000549064 ARHGEF11O15085 1522 aa12.85□□□□□ -0.35
LIMA1-204ENST00000549064 WIZO95785 1651 aa12.85□□□□□ -0.35
LIMA1-204ENST00000549064 URB2Q14146 1524 aaKnown RBP12.83□□□□□ -0.36
LIMA1-204ENST00000549064 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
LIMA1-204ENST00000549064 TRHP20396 242 aaPredicted RBP12.76□□□□□ -0.37
LIMA1-204ENST00000549064 CYB5RLQ6IPT4 315 aa12.76□□□□□ -0.37
LIMA1-204ENST00000549064 CFTRP13569 1480 aa12.76□□□□□ -0.37
LIMA1-204ENST00000549064 ZNF608Q9ULD9 1512 aaPredicted RBP12.75□□□□□ -0.37
LIMA1-204ENST00000549064 MYCNP04198 464 aaPredicted RBP12.73□□□□□ -0.37
LIMA1-204ENST00000549064 AMER1Q5JTC6 1135 aaPredicted RBP12.73□□□□□ -0.37
LIMA1-204ENST00000549064 SLC24A1O60721 1099 aa12.7□□□□□ -0.38
LIMA1-204ENST00000549064 ARAP1Q96P48 1450 aa12.7□□□□□ -0.38
LIMA1-204ENST00000549064 CHD1O14646 1710 aa12.68□□□□□ -0.38
LIMA1-204ENST00000549064 ATXN8OSP0DMR3 200 aa12.68□□□□□ -0.38
LIMA1-204ENST00000549064 FKBP8Q14318 412 aa12.67□□□□□ -0.38
LIMA1-204ENST00000549064 PRDM2Q13029 1718 aa12.67□□□□□ -0.38
LIMA1-204ENST00000549064 IFT140Q96RY7 1462 aa12.66□□□□□ -0.38
LIMA1-204ENST00000549064 EIF4G3O43432 1585 aaKnown RBP12.66□□□□□ -0.38
LIMA1-204ENST00000549064 TOP2AP11388 1531 aaKnown RBP12.6□□□□□ -0.39
LIMA1-204ENST00000549064 TOPBP1Q92547 1522 aa12.6□□□□□ -0.39
LIMA1-204ENST00000549064 RSF1Q96T23 1441 aaPredicted RBP12.56□□□□□ -0.4
LIMA1-204ENST00000549064 AQRO60306 1485 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIMA1-204ENST00000549064 FBLN2P98095 1184 aa12.55□□□□□ -0.4
LIMA1-204ENST00000549064 TARBP1Q13395 1621 aaKnown RBP12.53□□□□□ -0.4
LIMA1-204ENST00000549064 DNMBPQ6XZF7 1577 aa12.51□□□□□ -0.41
LIMA1-204ENST00000549064 CLASP1Q7Z460 1538 aa12.47□□□□□ -0.41
LIMA1-204ENST00000549064 ABCC8Q09428 1581 aa12.47□□□□□ -0.41
LIMA1-204ENST00000549064 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.41
LIMA1-204ENST00000549064 POLA1P09884 1462 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms