RNA–Protein interactions for RNA: ENST00000547068.5

NPAS3-205, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 1 (best) BASIC

Gene NPAS3, Length 2,531 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-205ENST00000547068 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
NPAS3-205ENST00000547068 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
NPAS3-205ENST00000547068 ABCC9O60706 1549 aa18.41■□□□□ 0.54
NPAS3-205ENST00000547068 ZCCHC6Q5VYS8 1495 aaKnown RBP18.22■□□□□ 0.51
NPAS3-205ENST00000547068 DCAF8L2P0C7V8 631 aa18.2■□□□□ 0.5
NPAS3-205ENST00000547068 HRCP23327 699 aa18.08■□□□□ 0.48
NPAS3-205ENST00000547068 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
NPAS3-205ENST00000547068 NACADO15069 1562 aa17.95■□□□□ 0.46
NPAS3-205ENST00000547068 MYO15BQ96JP2 1530 aa17.95■□□□□ 0.46
NPAS3-205ENST00000547068 RB1CC1Q8TDY2 1594 aa17.88■□□□□ 0.45
NPAS3-205ENST00000547068 SHROOM4Q9ULL8 1493 aa17.73■□□□□ 0.43
NPAS3-205ENST00000547068 SUPT5HO00267 1087 aaKnown RBP17.7■□□□□ 0.42
NPAS3-205ENST00000547068 PCGF6Q9BYE7 350 aa17.67■□□□□ 0.42
NPAS3-205ENST00000547068 PPARGC1BQ86YN6 1023 aaKnown RBP17.65■□□□□ 0.42
NPAS3-205ENST00000547068 PELP1Q8IZL8 1130 aaKnown RBP17.57■□□□□ 0.4
NPAS3-205ENST00000547068 SCRIBQ14160 1630 aa17.56■□□□□ 0.4
NPAS3-205ENST00000547068 CHIC1Q5VXU3 224 aa17.46■□□□□ 0.38
NPAS3-205ENST00000547068 UNC13AQ9UPW8 1703 aa17.44■□□□□ 0.38
NPAS3-205ENST00000547068 PABPN1Q86U42 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
NPAS3-205ENST00000547068 BICRAQ9NZM4 1560 aa17.27■□□□□ 0.36
NPAS3-205ENST00000547068 TRIM26Q12899 539 aaPredicted RBP17.12■□□□□ 0.33
NPAS3-205ENST00000547068 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
NPAS3-205ENST00000547068 LOC105371045A0A1W2PR82 267 aa17.03■□□□□ 0.32
NPAS3-205ENST00000547068 ZEB1P37275 1124 aaPredicted RBP17.03■□□□□ 0.32
NPAS3-205ENST00000547068 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
NPAS3-205ENST00000547068 MYT1Q01538 1121 aa16.92■□□□□ 0.3
NPAS3-205ENST00000547068 BAZ1AQ9NRL2 1556 aaPredicted RBP16.88■□□□□ 0.29
NPAS3-205ENST00000547068 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
NPAS3-205ENST00000547068 EIF4G1Q04637 1599 aaKnown RBP16.81■□□□□ 0.28
NPAS3-205ENST00000547068 MROH2BQ7Z745 1585 aa16.8■□□□□ 0.28
NPAS3-205ENST00000547068 RSF1Q96T23 1441 aaPredicted RBP16.77■□□□□ 0.28
NPAS3-205ENST00000547068 ACIN1Q9UKV3 1341 aaKnown RBP16.71■□□□□ 0.26
NPAS3-205ENST00000547068 WIZO95785 1651 aa16.65■□□□□ 0.26
NPAS3-205ENST00000547068 CC2D2AQ9P2K1 1620 aa16.65■□□□□ 0.26
NPAS3-205ENST00000547068 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
NPAS3-205ENST00000547068 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
NPAS3-205ENST00000547068 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
NPAS3-205ENST00000547068 PEG3Q9GZU2 1588 aa16.62■□□□□ 0.25
NPAS3-205ENST00000547068 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
NPAS3-205ENST00000547068 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
NPAS3-205ENST00000547068 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
NPAS3-205ENST00000547068 CENPBP07199 599 aaPredicted RBP16.51■□□□□ 0.23
NPAS3-205ENST00000547068 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
NPAS3-205ENST00000547068 HMGXB3Q12766 1538 aa16.49■□□□□ 0.23
NPAS3-205ENST00000547068 TOP2AP11388 1531 aaKnown RBP16.49■□□□□ 0.23
NPAS3-205ENST00000547068 DIEXFQ68CQ4 756 aaKnown RBP16.4■□□□□ 0.22
NPAS3-205ENST00000547068 TRIM41Q8WV44 630 aa16.39■□□□□ 0.21
NPAS3-205ENST00000547068 FAM9AQ8IZU1 332 aaPredicted RBP16.36■□□□□ 0.21
NPAS3-205ENST00000547068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
NPAS3-205ENST00000547068 CCER1Q8TC90 406 aaPredicted RBP16.35■□□□□ 0.21
NPAS3-205ENST00000547068 CCDC88BA6NC98 1476 aa16.32■□□□□ 0.2
NPAS3-205ENST00000547068 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
NPAS3-205ENST00000547068 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
NPAS3-205ENST00000547068 YTHDC1Q96MU7 727 aaKnown RBP16.11■□□□□ 0.17
NPAS3-205ENST00000547068 CFTRP13569 1480 aa16.09■□□□□ 0.17
NPAS3-205ENST00000547068 ZNF316A6NFI3 1004 aaPredicted RBP16.07■□□□□ 0.16
NPAS3-205ENST00000547068 LAMC3Q9Y6N6 1575 aa16.06■□□□□ 0.16
NPAS3-205ENST00000547068 NESP48681 1621 aa16.03■□□□□ 0.16
NPAS3-205ENST00000547068 PRDM2Q13029 1718 aa15.99■□□□□ 0.15
NPAS3-205ENST00000547068 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
NPAS3-205ENST00000547068 MIER1Q8N108 512 aa15.95■□□□□ 0.14
NPAS3-205ENST00000547068 FANCD2Q9BXW9 1451 aa15.93■□□□□ 0.14
NPAS3-205ENST00000547068 TTBK1Q5TCY1 1321 aaPredicted RBP15.91■□□□□ 0.14
NPAS3-205ENST00000547068 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
NPAS3-205ENST00000547068 ERCC6Q03468 1493 aa15.87■□□□□ 0.13
NPAS3-205ENST00000547068 WRNQ14191 1432 aaPredicted RBP eCLIP15.85■□□□□ 0.13
NPAS3-205ENST00000547068 ABCC8Q09428 1581 aa15.85■□□□□ 0.13
NPAS3-205ENST00000547068 KIF21AQ7Z4S6 1674 aa15.85■□□□□ 0.13
NPAS3-205ENST00000547068 CLSPNQ9HAW4 1339 aa15.78■□□□□ 0.12
NPAS3-205ENST00000547068 ANP32EQ9BTT0 268 aa15.78■□□□□ 0.12
NPAS3-205ENST00000547068 BCL11AQ9H165 835 aa15.76■□□□□ 0.11
NPAS3-205ENST00000547068 SUPT16HQ9Y5B9 1047 aaKnown RBP15.75■□□□□ 0.11
NPAS3-205ENST00000547068 MRC2Q9UBG0 1479 aa15.75■□□□□ 0.11
NPAS3-205ENST00000547068 CEP162Q5TB80 1403 aa15.74■□□□□ 0.11
NPAS3-205ENST00000547068 CUX1P39880 1505 aa15.73■□□□□ 0.11
NPAS3-205ENST00000547068 SYNJ1O43426 1573 aa15.72■□□□□ 0.11
NPAS3-205ENST00000547068 DNMBPQ6XZF7 1577 aa15.72■□□□□ 0.11
NPAS3-205ENST00000547068 TOP2BQ02880 1626 aa15.72■□□□□ 0.11
NPAS3-205ENST00000547068 URB2Q14146 1524 aaKnown RBP15.71■□□□□ 0.11
NPAS3-205ENST00000547068 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
NPAS3-205ENST00000547068 BIVM-ERCC5R4GMW8 1640 aa15.7■□□□□ 0.1
NPAS3-205ENST00000547068 TSHZ2Q9NRE2 1034 aa15.69■□□□□ 0.1
NPAS3-205ENST00000547068 THOC2Q8NI27 1593 aaKnown RBP15.66■□□□□ 0.1
NPAS3-205ENST00000547068 WDR62O43379 1518 aa15.66■□□□□ 0.1
NPAS3-205ENST00000547068 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
NPAS3-205ENST00000547068 TNIKQ9UKE5 1360 aa15.63■□□□□ 0.09
NPAS3-205ENST00000547068 HNRNPUL2Q1KMD3 747 aaKnown RBP15.62■□□□□ 0.09
NPAS3-205ENST00000547068 POLA1P09884 1462 aaPredicted RBP15.6■□□□□ 0.09
NPAS3-205ENST00000547068 SOGA1O94964 1423 aa15.6■□□□□ 0.09
NPAS3-205ENST00000547068 CSRNP3Q8WYN3 585 aa15.58■□□□□ 0.08
NPAS3-205ENST00000547068 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
NPAS3-205ENST00000547068 UBTFP17480 764 aaKnown RBP15.55■□□□□ 0.08
NPAS3-205ENST00000547068 CUX2O14529 1486 aa15.52■□□□□ 0.08
NPAS3-205ENST00000547068 IFT140Q96RY7 1462 aa15.52■□□□□ 0.07
NPAS3-205ENST00000547068 ABCA10Q8WWZ4 1543 aa15.49■□□□□ 0.07
NPAS3-205ENST00000547068 KIF27Q86VH2 1401 aa15.48■□□□□ 0.07
NPAS3-205ENST00000547068 TARBP1Q13395 1621 aaKnown RBP15.48■□□□□ 0.07
NPAS3-205ENST00000547068 EEA1Q15075 1411 aa15.46■□□□□ 0.07
NPAS3-205ENST00000547068 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
NPAS3-205ENST00000547068 RUSC2Q8N2Y8 1516 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms