RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
CLIP1-218ENST00000545889 DCAF8L2P0C7V8 631 aa15.62■□□□□ 0.09
CLIP1-218ENST00000545889 SHROOM4Q9ULL8 1493 aa14.92□□□□□ -0.02
CLIP1-218ENST00000545889 SUPT5HO00267 1087 aaKnown RBP14.59□□□□□ -0.07
CLIP1-218ENST00000545889 ABCC9O60706 1549 aa14.56□□□□□ -0.08
CLIP1-218ENST00000545889 CCDC180Q9P1Z9 1646 aa14.34□□□□□ -0.11
CLIP1-218ENST00000545889 ZCCHC6Q5VYS8 1495 aaKnown RBP14.1□□□□□ -0.15
CLIP1-218ENST00000545889 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
CLIP1-218ENST00000545889 FAM9AQ8IZU1 332 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-218ENST00000545889 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
CLIP1-218ENST00000545889 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
CLIP1-218ENST00000545889 EHMT2Q96KQ7 1210 aa13.79□□□□□ -0.2
CLIP1-218ENST00000545889 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.21
CLIP1-218ENST00000545889 NACADO15069 1562 aa13.68□□□□□ -0.22
CLIP1-218ENST00000545889 APLP2Q06481 763 aa13.64□□□□□ -0.23
CLIP1-218ENST00000545889 DCAF1Q9Y4B6 1507 aa13.61□□□□□ -0.23
CLIP1-218ENST00000545889 MYT1Q01538 1121 aa13.56□□□□□ -0.24
CLIP1-218ENST00000545889 TRIM41Q8WV44 630 aa13.54□□□□□ -0.24
CLIP1-218ENST00000545889 CHIC1Q5VXU3 224 aa13.39□□□□□ -0.27
CLIP1-218ENST00000545889 MYO15BQ96JP2 1530 aa13.38□□□□□ -0.27
CLIP1-218ENST00000545889 ATP1B4Q9UN42 357 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-218ENST00000545889 CECR2Q9BXF3 1484 aa13.38□□□□□ -0.27
CLIP1-218ENST00000545889 RANGAP1P46060 587 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-218ENST00000545889 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-218ENST00000545889 HRCP23327 699 aa13.27□□□□□ -0.29
CLIP1-218ENST00000545889 TTBK1Q5TCY1 1321 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-218ENST00000545889 PPARGC1BQ86YN6 1023 aaKnown RBP13.2□□□□□ -0.3
CLIP1-218ENST00000545889 LOC105371045A0A1W2PR82 267 aa13.19□□□□□ -0.3
CLIP1-218ENST00000545889 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
CLIP1-218ENST00000545889 MROH2BQ7Z745 1585 aa13.18□□□□□ -0.3
CLIP1-218ENST00000545889 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
CLIP1-218ENST00000545889 MYT1LQ9UL68 1186 aa13.17□□□□□ -0.3
CLIP1-218ENST00000545889 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-218ENST00000545889 BAZ1BQ9UIG0 1483 aaKnown RBP13.09□□□□□ -0.31
CLIP1-218ENST00000545889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-218ENST00000545889 HNRNPUL2Q1KMD3 747 aaKnown RBP13.05□□□□□ -0.32
CLIP1-218ENST00000545889 WIZO95785 1651 aa13.02□□□□□ -0.33
CLIP1-218ENST00000545889 SMARCA4P51532 1647 aa12.95□□□□□ -0.34
CLIP1-218ENST00000545889 BICRAQ9NZM4 1560 aa12.93□□□□□ -0.34
CLIP1-218ENST00000545889 ATAD2BQ9ULI0 1458 aa12.92□□□□□ -0.34
CLIP1-218ENST00000545889 CCDC88BA6NC98 1476 aa12.91□□□□□ -0.34
CLIP1-218ENST00000545889 SMARCA2P51531 1590 aa12.89□□□□□ -0.35
CLIP1-218ENST00000545889 UNC13AQ9UPW8 1703 aa12.85□□□□□ -0.35
CLIP1-218ENST00000545889 SCAF1Q9H7N4 1312 aaKnown RBP12.85□□□□□ -0.35
CLIP1-218ENST00000545889 EIF4G1Q04637 1599 aaKnown RBP12.84□□□□□ -0.35
CLIP1-218ENST00000545889 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
CLIP1-218ENST00000545889 FBLN2P98095 1184 aa12.84□□□□□ -0.35
CLIP1-218ENST00000545889 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
CLIP1-218ENST00000545889 WRNQ14191 1432 aaPredicted RBP eCLIP12.78□□□□□ -0.36
CLIP1-218ENST00000545889 DNAJC5BQ9UF47 199 aa12.75□□□□□ -0.37
CLIP1-218ENST00000545889 ABCC8Q09428 1581 aa12.73□□□□□ -0.37
CLIP1-218ENST00000545889 P3H3Q8IVL6 736 aa12.71□□□□□ -0.38
CLIP1-218ENST00000545889 NCAPD3P42695 1498 aa12.7□□□□□ -0.38
CLIP1-218ENST00000545889 CENPBP07199 599 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-218ENST00000545889 CC2D2AQ9P2K1 1620 aa12.69□□□□□ -0.38
CLIP1-218ENST00000545889 CADPSQ9ULU8 1353 aa12.69□□□□□ -0.38
CLIP1-218ENST00000545889 ERCC6Q03468 1493 aa12.68□□□□□ -0.38
CLIP1-218ENST00000545889 CCER1Q8TC90 406 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-218ENST00000545889 GTF3C3Q9Y5Q9 886 aa12.64□□□□□ -0.39
CLIP1-218ENST00000545889 ITGAEP38570 1179 aa12.64□□□□□ -0.39
CLIP1-218ENST00000545889 SOGA1O94964 1423 aa12.62□□□□□ -0.39
CLIP1-218ENST00000545889 ARID3CA6NKF2 412 aa12.6□□□□□ -0.39
CLIP1-218ENST00000545889 POLR3GLQ9BT43 218 aa12.59□□□□□ -0.39
CLIP1-218ENST00000545889 PDS5BQ9NTI5 1447 aa12.59□□□□□ -0.39
CLIP1-218ENST00000545889 SLC4A1APQ9BWU0 796 aaKnown RBP12.57□□□□□ -0.4
CLIP1-218ENST00000545889 NESP48681 1621 aa12.56□□□□□ -0.4
CLIP1-218ENST00000545889 TRIM26Q12899 539 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-218ENST00000545889 CHMP7Q8WUX9 453 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-218ENST00000545889 FANCD2Q9BXW9 1451 aa12.53□□□□□ -0.4
CLIP1-218ENST00000545889 KIF27Q86VH2 1401 aa12.53□□□□□ -0.4
CLIP1-218ENST00000545889 CUX2O14529 1486 aa12.53□□□□□ -0.4
CLIP1-218ENST00000545889 BCL11AQ9H165 835 aa12.53□□□□□ -0.4
CLIP1-218ENST00000545889 TDRD9Q8NDG6 1382 aaKnown RBP12.52□□□□□ -0.41
CLIP1-218ENST00000545889 ZEB1P37275 1124 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-218ENST00000545889 YTHDC1Q96MU7 727 aaKnown RBP12.51□□□□□ -0.41
CLIP1-218ENST00000545889 HMGXB3Q12766 1538 aa12.51□□□□□ -0.41
CLIP1-218ENST00000545889 ACIN1Q9UKV3 1341 aaKnown RBP12.5□□□□□ -0.41
CLIP1-218ENST00000545889 CEP164Q9UPV0 1460 aa12.49□□□□□ -0.41
CLIP1-218ENST00000545889 EEA1Q15075 1411 aa12.47□□□□□ -0.41
CLIP1-218ENST00000545889 RUSC2Q8N2Y8 1516 aa12.46□□□□□ -0.41
CLIP1-218ENST00000545889 CFTRP13569 1480 aa12.45□□□□□ -0.42
CLIP1-218ENST00000545889 NEUROD1Q13562 356 aa12.44□□□□□ -0.42
CLIP1-218ENST00000545889 PEG3Q9GZU2 1588 aa12.43□□□□□ -0.42
CLIP1-218ENST00000545889 GOLGA3Q08378 1498 aa12.42□□□□□ -0.42
CLIP1-218ENST00000545889 BCANQ96GW7 911 aa12.42□□□□□ -0.42
CLIP1-218ENST00000545889 CNGB1Q14028 1251 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-218ENST00000545889 CARMIL1Q5VZK9 1371 aa12.42□□□□□ -0.42
CLIP1-218ENST00000545889 CLIP1P30622 1438 aa12.41□□□□□ -0.42
CLIP1-218ENST00000545889 ESF1Q9H501 851 aaKnown RBP12.41□□□□□ -0.42
CLIP1-218ENST00000545889 FAM50AQ14320 339 aaKnown RBP12.4□□□□□ -0.42
CLIP1-218ENST00000545889 CEP162Q5TB80 1403 aa12.39□□□□□ -0.43
CLIP1-218ENST00000545889 RAD54L2Q9Y4B4 1467 aa12.38□□□□□ -0.43
CLIP1-218ENST00000545889 NPM1P06748 294 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLIP1-218ENST00000545889 ERICH6Q7L0X2 663 aa12.37□□□□□ -0.43
CLIP1-218ENST00000545889 FGD5Q6ZNL6 1462 aa12.37□□□□□ -0.43
CLIP1-218ENST00000545889 NEFLP07196 543 aa12.36□□□□□ -0.43
CLIP1-218ENST00000545889 TNIKQ9UKE5 1360 aa12.35□□□□□ -0.43
CLIP1-218ENST00000545889 PLPPR3Q6T4P5 718 aa12.34□□□□□ -0.43
CLIP1-218ENST00000545889 SYNJ1O43426 1573 aa12.33□□□□□ -0.43
CLIP1-218ENST00000545889 PRKCSHP14314 528 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms