RNA–Protein interactions for RNA: ENST00000540999.5

TCF4-207, Transcript of transcription factor 4, humanhuman

TSL 2 BASIC

Gene TCF4, Length 2,572 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-207ENST00000540999 NISCHQ9Y2I1 1504 aa18.55■□□□□ 0.56
TCF4-207ENST00000540999 SLC24A1O60721 1099 aa16.2■□□□□ 0.18
TCF4-207ENST00000540999 CCDC180Q9P1Z9 1646 aa16.05■□□□□ 0.16
TCF4-207ENST00000540999 MYT1Q01538 1121 aa16.05■□□□□ 0.16
TCF4-207ENST00000540999 PELP1Q8IZL8 1130 aaKnown RBP16.03■□□□□ 0.16
TCF4-207ENST00000540999 TTBK1Q5TCY1 1321 aaPredicted RBP15.69■□□□□ 0.1
TCF4-207ENST00000540999 ZCCHC6Q5VYS8 1495 aaKnown RBP15.58■□□□□ 0.08
TCF4-207ENST00000540999 DCAF8L2P0C7V8 631 aa15.52■□□□□ 0.07
TCF4-207ENST00000540999 PRKCSHP14314 528 aaPredicted RBP15.51■□□□□ 0.07
TCF4-207ENST00000540999 SHROOM4Q9ULL8 1493 aa15.39■□□□□ 0.05
TCF4-207ENST00000540999 ABCC9O60706 1549 aa15.35■□□□□ 0.05
TCF4-207ENST00000540999 APLP2Q06481 763 aa15.27■□□□□ 0.03
TCF4-207ENST00000540999 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
TCF4-207ENST00000540999 ERICH6Q7L0X2 663 aa15.21■□□□□ 0.03
TCF4-207ENST00000540999 DAXXQ9UER7 740 aaPredicted RBP15.15■□□□□ 0.02
TCF4-207ENST00000540999 MYO15BQ96JP2 1530 aa14.99□□□□□ -0.01
TCF4-207ENST00000540999 NACADO15069 1562 aa14.96□□□□□ -0.01
TCF4-207ENST00000540999 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
TCF4-207ENST00000540999 RB1CC1Q8TDY2 1594 aa14.84□□□□□ -0.03
TCF4-207ENST00000540999 SUPT5HO00267 1087 aaKnown RBP14.81□□□□□ -0.04
TCF4-207ENST00000540999 UNC13AQ9UPW8 1703 aa14.65□□□□□ -0.06
TCF4-207ENST00000540999 PABPN1Q86U42 306 aaKnown RBP eCLIP14.55□□□□□ -0.08
TCF4-207ENST00000540999 BCL11AQ9H165 835 aa14.52□□□□□ -0.08
TCF4-207ENST00000540999 CECR2Q9BXF3 1484 aa14.52□□□□□ -0.08
TCF4-207ENST00000540999 BICRAQ9NZM4 1560 aa14.48□□□□□ -0.09
TCF4-207ENST00000540999 RSF1Q96T23 1441 aaPredicted RBP14.46□□□□□ -0.09
TCF4-207ENST00000540999 EIF5BO60841 1220 aaKnown RBP14.41□□□□□ -0.1
TCF4-207ENST00000540999 MROH2BQ7Z745 1585 aa14.41□□□□□ -0.1
TCF4-207ENST00000540999 AEBP2Q6ZN18 517 aaPredicted RBP14.36□□□□□ -0.11
TCF4-207ENST00000540999 NCBP3Q53F19 620 aaKnown RBP14.32□□□□□ -0.12
TCF4-207ENST00000540999 WIZO95785 1651 aa14.31□□□□□ -0.12
TCF4-207ENST00000540999 BAZ1AQ9NRL2 1556 aaPredicted RBP14.28□□□□□ -0.12
TCF4-207ENST00000540999 FAM9AQ8IZU1 332 aaPredicted RBP14.27□□□□□ -0.13
TCF4-207ENST00000540999 SMARCA4P51532 1647 aa14.25□□□□□ -0.13
TCF4-207ENST00000540999 CHIC1Q5VXU3 224 aa14.18□□□□□ -0.14
TCF4-207ENST00000540999 PLPPR3Q6T4P5 718 aa14.14□□□□□ -0.15
TCF4-207ENST00000540999 PLEKHG5O94827 1062 aa14.07□□□□□ -0.16
TCF4-207ENST00000540999 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
TCF4-207ENST00000540999 EHMT2Q96KQ7 1210 aa14.05□□□□□ -0.16
TCF4-207ENST00000540999 TOP2AP11388 1531 aaKnown RBP14.05□□□□□ -0.16
TCF4-207ENST00000540999 ATAD2BQ9ULI0 1458 aa14.02□□□□□ -0.16
TCF4-207ENST00000540999 EIF4G1Q04637 1599 aaKnown RBP14.02□□□□□ -0.16
TCF4-207ENST00000540999 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
TCF4-207ENST00000540999 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
TCF4-207ENST00000540999 SMARCA2P51531 1590 aa13.97□□□□□ -0.17
TCF4-207ENST00000540999 ARXQ96QS3 562 aa13.95□□□□□ -0.18
TCF4-207ENST00000540999 BAZ1BQ9UIG0 1483 aaKnown RBP13.94□□□□□ -0.18
TCF4-207ENST00000540999 NCAPD3P42695 1498 aa13.85□□□□□ -0.19
TCF4-207ENST00000540999 RANGAP1P46060 587 aaPredicted RBP13.84□□□□□ -0.19
TCF4-207ENST00000540999 CC2D2AQ9P2K1 1620 aa13.83□□□□□ -0.2
TCF4-207ENST00000540999 KLHL34Q8N239 644 aa13.83□□□□□ -0.2
TCF4-207ENST00000540999 TRIM41Q8WV44 630 aa13.83□□□□□ -0.2
TCF4-207ENST00000540999 TIMELESSQ9UNS1 1208 aa13.83□□□□□ -0.2
TCF4-207ENST00000540999 SCAF1Q9H7N4 1312 aaKnown RBP13.82□□□□□ -0.2
TCF4-207ENST00000540999 HMGXB3Q12766 1538 aa13.79□□□□□ -0.2
TCF4-207ENST00000540999 ABCC8Q09428 1581 aa13.77□□□□□ -0.2
TCF4-207ENST00000540999 PODXL2Q9NZ53 605 aa13.74□□□□□ -0.21
TCF4-207ENST00000540999 LOC105371045A0A1W2PR82 267 aa13.7□□□□□ -0.22
TCF4-207ENST00000540999 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
TCF4-207ENST00000540999 CENPBP07199 599 aaPredicted RBP13.64□□□□□ -0.23
TCF4-207ENST00000540999 UBE2Q2Q8WVN8 375 aa13.63□□□□□ -0.23
TCF4-207ENST00000540999 HRCP23327 699 aa13.61□□□□□ -0.23
TCF4-207ENST00000540999 WRNQ14191 1432 aaPredicted RBP eCLIP13.59□□□□□ -0.23
TCF4-207ENST00000540999 CFTRP13569 1480 aa13.57□□□□□ -0.24
TCF4-207ENST00000540999 SYNJ1O43426 1573 aa13.57□□□□□ -0.24
TCF4-207ENST00000540999 TULP1O00294 542 aaPredicted RBP13.55□□□□□ -0.24
TCF4-207ENST00000540999 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
TCF4-207ENST00000540999 SOGA1O94964 1423 aa13.52□□□□□ -0.24
TCF4-207ENST00000540999 NESP48681 1621 aa13.52□□□□□ -0.25
TCF4-207ENST00000540999 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
TCF4-207ENST00000540999 HOMEZQ8IX15 550 aa13.48□□□□□ -0.25
TCF4-207ENST00000540999 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
TCF4-207ENST00000540999 PRDM2Q13029 1718 aa13.46□□□□□ -0.26
TCF4-207ENST00000540999 CUX1P39880 1505 aa13.45□□□□□ -0.26
TCF4-207ENST00000540999 TOP2BQ02880 1626 aa13.44□□□□□ -0.26
TCF4-207ENST00000540999 BIVM-ERCC5R4GMW8 1640 aa13.4□□□□□ -0.26
TCF4-207ENST00000540999 FANCD2Q9BXW9 1451 aa13.4□□□□□ -0.26
TCF4-207ENST00000540999 PKNOX2Q96KN3 472 aa13.37□□□□□ -0.27
TCF4-207ENST00000540999 CSRNP3Q8WYN3 585 aa13.36□□□□□ -0.27
TCF4-207ENST00000540999 PDIA4P13667 645 aaKnown RBP13.36□□□□□ -0.27
TCF4-207ENST00000540999 ANO8Q9HCE9 1232 aaPredicted RBP13.34□□□□□ -0.27
TCF4-207ENST00000540999 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
TCF4-207ENST00000540999 ANP32EQ9BTT0 268 aa13.3□□□□□ -0.28
TCF4-207ENST00000540999 EEA1Q15075 1411 aa13.3□□□□□ -0.28
TCF4-207ENST00000540999 KIF21AQ7Z4S6 1674 aa13.29□□□□□ -0.28
TCF4-207ENST00000540999 FGD5Q6ZNL6 1462 aa13.29□□□□□ -0.28
TCF4-207ENST00000540999 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
TCF4-207ENST00000540999 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
TCF4-207ENST00000540999 TOPBP1Q92547 1522 aa13.26□□□□□ -0.29
TCF4-207ENST00000540999 URB2Q14146 1524 aaKnown RBP13.26□□□□□ -0.29
TCF4-207ENST00000540999 UBTFP17480 764 aaKnown RBP13.26□□□□□ -0.29
TCF4-207ENST00000540999 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
TCF4-207ENST00000540999 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
TCF4-207ENST00000540999 PDE4CQ08493 712 aa13.23□□□□□ -0.29
TCF4-207ENST00000540999 CUX2O14529 1486 aa13.22□□□□□ -0.29
TCF4-207ENST00000540999 TAOK2Q9UL54 1235 aa13.22□□□□□ -0.29
TCF4-207ENST00000540999 POLA1P09884 1462 aaPredicted RBP13.21□□□□□ -0.29
TCF4-207ENST00000540999 RAPGEF2Q9Y4G8 1499 aa13.21□□□□□ -0.29
TCF4-207ENST00000540999 KIF27Q86VH2 1401 aa13.21□□□□□ -0.3
TCF4-207ENST00000540999 GOLGA3Q08378 1498 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms