RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 AEBP2Q6ZN18 517 aaPredicted RBP9.66□□□□□ -0.86
MCF2-210ENST00000536274 CHIC1Q5VXU3 224 aa9.48□□□□□ -0.89
MCF2-210ENST00000536274 SENP3Q9H4L4 574 aaPredicted RBP8.56□□□□□ -1.04
MCF2-210ENST00000536274 PHF23Q9BUL5 403 aaPredicted RBP8.31□□□□□ -1.08
MCF2-210ENST00000536274 FOXD1Q16676 465 aa7.75□□□□□ -1.17
MCF2-210ENST00000536274 NISCHQ9Y2I1 1504 aa7.74□□□□□ -1.17
MCF2-210ENST00000536274 PLPPR3Q6T4P5 718 aa7.7□□□□□ -1.18
MCF2-210ENST00000536274 MSH5O43196 834 aa7.5□□□□□ -1.21
MCF2-210ENST00000536274 PIAS4Q8N2W9 510 aaPredicted RBP7.34□□□□□ -1.23
MCF2-210ENST00000536274 CCDC180Q9P1Z9 1646 aa7.26□□□□□ -1.25
MCF2-210ENST00000536274 ADRA2BP18089 450 aa7.22□□□□□ -1.25
MCF2-210ENST00000536274 PPP6R1Q9UPN7 881 aa7.17□□□□□ -1.26
MCF2-210ENST00000536274 SCAF1Q9H7N4 1312 aaKnown RBP7□□□□□ -1.29
MCF2-210ENST00000536274 POTEDQ86YR6 584 aa6.95□□□□□ -1.3
MCF2-210ENST00000536274 ABCC9O60706 1549 aa6.85□□□□□ -1.31
MCF2-210ENST00000536274 MYO15BQ96JP2 1530 aa6.83□□□□□ -1.32
MCF2-210ENST00000536274 RB1CC1Q8TDY2 1594 aa6.8□□□□□ -1.32
MCF2-210ENST00000536274 SHROOM4Q9ULL8 1493 aa6.79□□□□□ -1.32
MCF2-210ENST00000536274 NACADO15069 1562 aa6.79□□□□□ -1.32
MCF2-210ENST00000536274 DMRT2Q9Y5R5 561 aa6.74□□□□□ -1.33
MCF2-210ENST00000536274 PPP4R3CPQ6ZMV5 832 aa6.67□□□□□ -1.34
MCF2-210ENST00000536274 NCBP3Q53F19 620 aaKnown RBP6.67□□□□□ -1.34
MCF2-210ENST00000536274 DCAF1Q9Y4B6 1507 aa6.64□□□□□ -1.35
MCF2-210ENST00000536274 UNC13AQ9UPW8 1703 aa6.63□□□□□ -1.35
MCF2-210ENST00000536274 CNKSR2Q8WXI2 1034 aa6.63□□□□□ -1.35
MCF2-210ENST00000536274 BICRAQ9NZM4 1560 aa6.55□□□□□ -1.36
MCF2-210ENST00000536274 MAPK8IP2Q13387 824 aaPredicted RBP6.55□□□□□ -1.36
MCF2-210ENST00000536274 RNF216Q9NWF9 866 aaPredicted RBP6.53□□□□□ -1.36
MCF2-210ENST00000536274 HOXD11P31277 338 aaPredicted RBP6.52□□□□□ -1.37
MCF2-210ENST00000536274 DNAJC5BQ9UF47 199 aa6.48□□□□□ -1.37
MCF2-210ENST00000536274 PPARGC1BQ86YN6 1023 aaKnown RBP6.48□□□□□ -1.37
MCF2-210ENST00000536274 ZCCHC6Q5VYS8 1495 aaKnown RBP6.45□□□□□ -1.38
MCF2-210ENST00000536274 DCAF8L1A6NGE4 600 aa6.41□□□□□ -1.38
MCF2-210ENST00000536274 PELP1Q8IZL8 1130 aaKnown RBP6.41□□□□□ -1.38
MCF2-210ENST00000536274 EIF4G1Q04637 1599 aaKnown RBP6.37□□□□□ -1.39
MCF2-210ENST00000536274 CC2D2AQ9P2K1 1620 aa6.37□□□□□ -1.39
MCF2-210ENST00000536274 HRCP23327 699 aa6.37□□□□□ -1.39
MCF2-210ENST00000536274 CECR2Q9BXF3 1484 aa6.31□□□□□ -1.4
MCF2-210ENST00000536274 C1QBPQ07021 282 aaKnown RBP6.3□□□□□ -1.4
MCF2-210ENST00000536274 CUX2O14529 1486 aa6.3□□□□□ -1.4
MCF2-210ENST00000536274 CACNB1Q02641 598 aaPredicted RBP6.29□□□□□ -1.4
MCF2-210ENST00000536274 EHMT2Q96KQ7 1210 aa6.29□□□□□ -1.4
MCF2-210ENST00000536274 APLP2Q06481 763 aa6.28□□□□□ -1.4
MCF2-210ENST00000536274 NPM3O75607 178 aaKnown RBP6.27□□□□□ -1.41
MCF2-210ENST00000536274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.26□□□□□ -1.41
MCF2-210ENST00000536274 RNF39Q9H2S5 420 aa6.24□□□□□ -1.41
MCF2-210ENST00000536274 PCGF6Q9BYE7 350 aa6.24□□□□□ -1.41
MCF2-210ENST00000536274 HMGXB3Q12766 1538 aa6.23□□□□□ -1.41
MCF2-210ENST00000536274 SCRIBQ14160 1630 aa6.22□□□□□ -1.41
MCF2-210ENST00000536274 SMARCA2P51531 1590 aa6.21□□□□□ -1.41
MCF2-210ENST00000536274 PEG3Q9GZU2 1588 aa6.2□□□□□ -1.42
MCF2-210ENST00000536274 NCAPD3P42695 1498 aa6.18□□□□□ -1.42
MCF2-210ENST00000536274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.18□□□□□ -1.42
MCF2-210ENST00000536274 HNRNPUL2Q1KMD3 747 aaKnown RBP6.18□□□□□ -1.42
MCF2-210ENST00000536274 PABPN1Q86U42 306 aaKnown RBP eCLIP6.17□□□□□ -1.42
MCF2-210ENST00000536274 MYT1Q01538 1121 aa6.17□□□□□ -1.42
MCF2-210ENST00000536274 DNAJC5Q9H3Z4 198 aa6.15□□□□□ -1.43
MCF2-210ENST00000536274 SLC24A1O60721 1099 aa6.14□□□□□ -1.43
MCF2-210ENST00000536274 KCNA4P22459 653 aa6.14□□□□□ -1.43
MCF2-210ENST00000536274 LAMC3Q9Y6N6 1575 aa6.12□□□□□ -1.43
MCF2-210ENST00000536274 THOC2Q8NI27 1593 aaKnown RBP6.11□□□□□ -1.43
MCF2-210ENST00000536274 SMARCA4P51532 1647 aa6.09□□□□□ -1.43
MCF2-210ENST00000536274 PRKCSHP14314 528 aaPredicted RBP6.08□□□□□ -1.44
MCF2-210ENST00000536274 BAZ1AQ9NRL2 1556 aaPredicted RBP6.07□□□□□ -1.44
MCF2-210ENST00000536274 FAM9AQ8IZU1 332 aaPredicted RBP6.07□□□□□ -1.44
MCF2-210ENST00000536274 SAMD1Q6SPF0 538 aaPredicted RBP6.06□□□□□ -1.44
MCF2-210ENST00000536274 BCL11AQ9H165 835 aa6.06□□□□□ -1.44
MCF2-210ENST00000536274 ATAD2BQ9ULI0 1458 aa6.06□□□□□ -1.44
MCF2-210ENST00000536274 NEUROD1Q13562 356 aa6.03□□□□□ -1.44
MCF2-210ENST00000536274 GTF3C3Q9Y5Q9 886 aa6.02□□□□□ -1.44
MCF2-210ENST00000536274 PRDM2Q13029 1718 aa6.02□□□□□ -1.45
MCF2-210ENST00000536274 WDR62O43379 1518 aa6.01□□□□□ -1.45
MCF2-210ENST00000536274 CSRNP3Q8WYN3 585 aa6□□□□□ -1.45
MCF2-210ENST00000536274 ZNF219Q9P2Y4 722 aaPredicted RBP6□□□□□ -1.45
MCF2-210ENST00000536274 ERCC6Q03468 1493 aa5.99□□□□□ -1.45
MCF2-210ENST00000536274 U3KPZ7 1027 aaPredicted RBP5.98□□□□□ -1.45
MCF2-210ENST00000536274 BAZ1BQ9UIG0 1483 aaKnown RBP5.98□□□□□ -1.45
MCF2-210ENST00000536274 SLC4A1APQ9BWU0 796 aaKnown RBP5.97□□□□□ -1.45
MCF2-210ENST00000536274 KIF21AQ7Z4S6 1674 aa5.97□□□□□ -1.45
MCF2-210ENST00000536274 MYCNP04198 464 aaPredicted RBP5.97□□□□□ -1.45
MCF2-210ENST00000536274 PDS5BQ9NTI5 1447 aa5.97□□□□□ -1.45
MCF2-210ENST00000536274 ACIN1Q9UKV3 1341 aaKnown RBP5.97□□□□□ -1.45
MCF2-210ENST00000536274 DCAF8L2P0C7V8 631 aa5.96□□□□□ -1.45
MCF2-210ENST00000536274 WDR97A6NE52 1622 aa5.96□□□□□ -1.46
MCF2-210ENST00000536274 CAPN15O75808 1086 aa5.95□□□□□ -1.46
MCF2-210ENST00000536274 MRC2Q9UBG0 1479 aa5.95□□□□□ -1.46
MCF2-210ENST00000536274 SUPT5HO00267 1087 aaKnown RBP5.9□□□□□ -1.46
MCF2-210ENST00000536274 SLC4A2P04920 1241 aa5.9□□□□□ -1.46
MCF2-210ENST00000536274 FOXD4L1Q9NU39 408 aa5.9□□□□□ -1.46
MCF2-210ENST00000536274 ZBTB12Q9Y330 459 aaPredicted RBP5.88□□□□□ -1.47
MCF2-210ENST00000536274 CADPSQ9ULU8 1353 aa5.88□□□□□ -1.47
MCF2-210ENST00000536274 RTN4Q9NQC3 1192 aaKnown RBP5.86□□□□□ -1.47
MCF2-210ENST00000536274 CFTRP13569 1480 aa5.86□□□□□ -1.47
MCF2-210ENST00000536274 CEP164Q9UPV0 1460 aa5.86□□□□□ -1.47
MCF2-210ENST00000536274 ABCC8Q09428 1581 aa5.86□□□□□ -1.47
MCF2-210ENST00000536274 TOP2AP11388 1531 aaKnown RBP5.86□□□□□ -1.47
MCF2-210ENST00000536274 ATXN8OSP0DMR3 200 aa5.86□□□□□ -1.47
MCF2-210ENST00000536274 NESP48681 1621 aa5.85□□□□□ -1.47
MCF2-210ENST00000536274 CENPBP07199 599 aaPredicted RBP5.85□□□□□ -1.47
MCF2-210ENST00000536274 YTHDC1Q96MU7 727 aaKnown RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms