RNA–Protein interactions for RNA: ENST00000532149.1

CHD7-211, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-211ENST00000532149 AEBP2Q6ZN18 517 aaPredicted RBP30.8■■■□□ 2.52
CHD7-211ENST00000532149 CHIC1Q5VXU3 224 aa29.15■■■□□ 2.26
CHD7-211ENST00000532149 NISCHQ9Y2I1 1504 aa27.1■■□□□ 1.93
CHD7-211ENST00000532149 SENP3Q9H4L4 574 aaPredicted RBP26.08■■□□□ 1.77
CHD7-211ENST00000532149 PHF23Q9BUL5 403 aaPredicted RBP25.82■■□□□ 1.72
CHD7-211ENST00000532149 FOXD1Q16676 465 aa24.43■■□□□ 1.5
CHD7-211ENST00000532149 CCDC180Q9P1Z9 1646 aa23.65■■□□□ 1.38
CHD7-211ENST00000532149 PLPPR3Q6T4P5 718 aa23.2■■□□□ 1.3
CHD7-211ENST00000532149 POTEDQ86YR6 584 aa22.92■■□□□ 1.26
CHD7-211ENST00000532149 PPP6R1Q9UPN7 881 aa22.91■■□□□ 1.26
CHD7-211ENST00000532149 ZCCHC6Q5VYS8 1495 aaKnown RBP22.8■■□□□ 1.24
CHD7-211ENST00000532149 ADRA2BP18089 450 aa22.77■■□□□ 1.24
CHD7-211ENST00000532149 PIAS4Q8N2W9 510 aaPredicted RBP22.72■■□□□ 1.23
CHD7-211ENST00000532149 MSH5O43196 834 aa22.7■■□□□ 1.22
CHD7-211ENST00000532149 DCAF1Q9Y4B6 1507 aa22.62■■□□□ 1.21
CHD7-211ENST00000532149 MYO15BQ96JP2 1530 aa22.32■■□□□ 1.16
CHD7-211ENST00000532149 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
CHD7-211ENST00000532149 NACADO15069 1562 aa21.98■■□□□ 1.11
CHD7-211ENST00000532149 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
CHD7-211ENST00000532149 ABCC9O60706 1549 aa21.8■■□□□ 1.08
CHD7-211ENST00000532149 RB1CC1Q8TDY2 1594 aa21.69■■□□□ 1.06
CHD7-211ENST00000532149 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
CHD7-211ENST00000532149 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
CHD7-211ENST00000532149 RSF1Q96T23 1441 aaPredicted RBP21.05■□□□□ 0.96
CHD7-211ENST00000532149 UNC13AQ9UPW8 1703 aa21.03■□□□□ 0.96
CHD7-211ENST00000532149 BAZ1AQ9NRL2 1556 aaPredicted RBP20.98■□□□□ 0.95
CHD7-211ENST00000532149 MAPK8IP2Q13387 824 aaPredicted RBP20.96■□□□□ 0.95
CHD7-211ENST00000532149 CECR2Q9BXF3 1484 aa20.83■□□□□ 0.93
CHD7-211ENST00000532149 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.92
CHD7-211ENST00000532149 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
CHD7-211ENST00000532149 DMRT2Q9Y5R5 561 aa20.74■□□□□ 0.91
CHD7-211ENST00000532149 SMARCA4P51532 1647 aa20.74■□□□□ 0.91
CHD7-211ENST00000532149 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
CHD7-211ENST00000532149 PEG3Q9GZU2 1588 aa20.62■□□□□ 0.89
CHD7-211ENST00000532149 WIZO95785 1651 aa20.61■□□□□ 0.89
CHD7-211ENST00000532149 TOP2AP11388 1531 aaKnown RBP20.58■□□□□ 0.89
CHD7-211ENST00000532149 PABPN1Q86U42 306 aaKnown RBP eCLIP20.55■□□□□ 0.88
CHD7-211ENST00000532149 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
CHD7-211ENST00000532149 PPP4R3CPQ6ZMV5 832 aa20.4■□□□□ 0.86
CHD7-211ENST00000532149 ATAD2BQ9ULI0 1458 aa20.36■□□□□ 0.85
CHD7-211ENST00000532149 CCDC88BA6NC98 1476 aa20.3■□□□□ 0.84
CHD7-211ENST00000532149 BAZ1BQ9UIG0 1483 aaKnown RBP20.27■□□□□ 0.84
CHD7-211ENST00000532149 NCAPD3P42695 1498 aa20.24■□□□□ 0.83
CHD7-211ENST00000532149 HMGXB3Q12766 1538 aa20.24■□□□□ 0.83
CHD7-211ENST00000532149 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
CHD7-211ENST00000532149 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
CHD7-211ENST00000532149 HOXD11P31277 338 aaPredicted RBP20.01■□□□□ 0.79
CHD7-211ENST00000532149 CNKSR2Q8WXI2 1034 aa19.97■□□□□ 0.79
CHD7-211ENST00000532149 EEA1Q15075 1411 aa19.94■□□□□ 0.78
CHD7-211ENST00000532149 WRNQ14191 1432 aaPredicted RBP eCLIP19.86■□□□□ 0.77
CHD7-211ENST00000532149 CC2D2AQ9P2K1 1620 aa19.84■□□□□ 0.77
CHD7-211ENST00000532149 CFTRP13569 1480 aa19.81■□□□□ 0.76
CHD7-211ENST00000532149 RNF216Q9NWF9 866 aaPredicted RBP19.81■□□□□ 0.76
CHD7-211ENST00000532149 ABCC8Q09428 1581 aa19.79■□□□□ 0.76
CHD7-211ENST00000532149 PRDM2Q13029 1718 aa19.76■□□□□ 0.75
CHD7-211ENST00000532149 DCAF8L1A6NGE4 600 aa19.76■□□□□ 0.75
CHD7-211ENST00000532149 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
CHD7-211ENST00000532149 LOC105371045A0A1W2PR82 267 aa19.7■□□□□ 0.74
CHD7-211ENST00000532149 TOP2BQ02880 1626 aa19.69■□□□□ 0.74
CHD7-211ENST00000532149 BIVM-ERCC5R4GMW8 1640 aa19.67■□□□□ 0.74
CHD7-211ENST00000532149 SYNJ1O43426 1573 aa19.62■□□□□ 0.73
CHD7-211ENST00000532149 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
CHD7-211ENST00000532149 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
CHD7-211ENST00000532149 LAMC3Q9Y6N6 1575 aa19.53■□□□□ 0.72
CHD7-211ENST00000532149 SOGA1O94964 1423 aa19.52■□□□□ 0.72
CHD7-211ENST00000532149 TNIKQ9UKE5 1360 aa19.51■□□□□ 0.71
CHD7-211ENST00000532149 CEP164Q9UPV0 1460 aa19.51■□□□□ 0.71
CHD7-211ENST00000532149 GOLGA3Q08378 1498 aa19.49■□□□□ 0.71
CHD7-211ENST00000532149 KIF21BO75037 1637 aa19.49■□□□□ 0.71
CHD7-211ENST00000532149 CACNB1Q02641 598 aaPredicted RBP19.48■□□□□ 0.71
CHD7-211ENST00000532149 NCBP3Q53F19 620 aaKnown RBP19.48■□□□□ 0.71
CHD7-211ENST00000532149 RNF39Q9H2S5 420 aa19.47■□□□□ 0.71
CHD7-211ENST00000532149 CUX1P39880 1505 aa19.46■□□□□ 0.71
CHD7-211ENST00000532149 KIF27Q86VH2 1401 aa19.42■□□□□ 0.7
CHD7-211ENST00000532149 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
CHD7-211ENST00000532149 PDS5BQ9NTI5 1447 aa19.4■□□□□ 0.7
CHD7-211ENST00000532149 ERICH3Q5RHP9 1530 aa19.37■□□□□ 0.69
CHD7-211ENST00000532149 NPM3O75607 178 aaKnown RBP19.37■□□□□ 0.69
CHD7-211ENST00000532149 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
CHD7-211ENST00000532149 DNMBPQ6XZF7 1577 aa19.34■□□□□ 0.69
CHD7-211ENST00000532149 TRIM26Q12899 539 aaPredicted RBP19.33■□□□□ 0.68
CHD7-211ENST00000532149 UBTFP17480 764 aaKnown RBP19.31■□□□□ 0.68
CHD7-211ENST00000532149 CEP162Q5TB80 1403 aa19.3■□□□□ 0.68
CHD7-211ENST00000532149 PRXQ9BXM0 1461 aa19.28■□□□□ 0.68
CHD7-211ENST00000532149 DNAJC5BQ9UF47 199 aa19.26■□□□□ 0.67
CHD7-211ENST00000532149 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
CHD7-211ENST00000532149 TOPBP1Q92547 1522 aa19.22■□□□□ 0.67
CHD7-211ENST00000532149 ABCA10Q8WWZ4 1543 aa19.2■□□□□ 0.66
CHD7-211ENST00000532149 CUX2O14529 1486 aa19.17■□□□□ 0.66
CHD7-211ENST00000532149 NESP48681 1621 aa19.16■□□□□ 0.66
CHD7-211ENST00000532149 RAPGEF2Q9Y4G8 1499 aa19.16■□□□□ 0.66
CHD7-211ENST00000532149 PCGF6Q9BYE7 350 aa19.15■□□□□ 0.66
CHD7-211ENST00000532149 IGF1RP08069 1367 aa19.13■□□□□ 0.65
CHD7-211ENST00000532149 CLIP1P30622 1438 aa19.13■□□□□ 0.65
CHD7-211ENST00000532149 POLA1P09884 1462 aaPredicted RBP19.12■□□□□ 0.65
CHD7-211ENST00000532149 C1QBPQ07021 282 aaKnown RBP19.11■□□□□ 0.65
CHD7-211ENST00000532149 EHMT2Q96KQ7 1210 aa19.11■□□□□ 0.65
CHD7-211ENST00000532149 URB2Q14146 1524 aaKnown RBP19.07■□□□□ 0.64
CHD7-211ENST00000532149 CUL7Q14999 1698 aa19.07■□□□□ 0.64
CHD7-211ENST00000532149 CARMIL1Q5VZK9 1371 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms