RNA–Protein interactions for RNA: ENST00000526262.5

PPFIA1-206, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 1 (best)

Gene PPFIA1, Length 4,537 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-206ENST00000526262 NISCHQ9Y2I1 1504 aa17.45■□□□□ 0.38
PPFIA1-206ENST00000526262 DCAF8L2P0C7V8 631 aa16.14■□□□□ 0.17
PPFIA1-206ENST00000526262 SHROOM4Q9ULL8 1493 aa15.44■□□□□ 0.06
PPFIA1-206ENST00000526262 SUPT5HO00267 1087 aaKnown RBP15.28■□□□□ 0.04
PPFIA1-206ENST00000526262 ABCC9O60706 1549 aa14.73□□□□□ -0.05
PPFIA1-206ENST00000526262 CCDC180Q9P1Z9 1646 aa14.7□□□□□ -0.06
PPFIA1-206ENST00000526262 ZCCHC6Q5VYS8 1495 aaKnown RBP14.53□□□□□ -0.08
PPFIA1-206ENST00000526262 EHMT2Q96KQ7 1210 aa14.31□□□□□ -0.12
PPFIA1-206ENST00000526262 PABPN1Q86U42 306 aaKnown RBP eCLIP14.29□□□□□ -0.12
PPFIA1-206ENST00000526262 TRIM41Q8WV44 630 aa14.26□□□□□ -0.13
PPFIA1-206ENST00000526262 FAM9AQ8IZU1 332 aaPredicted RBP14.26□□□□□ -0.13
PPFIA1-206ENST00000526262 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
PPFIA1-206ENST00000526262 CHIC1Q5VXU3 224 aa14.09□□□□□ -0.15
PPFIA1-206ENST00000526262 DCAF1Q9Y4B6 1507 aa14.09□□□□□ -0.15
PPFIA1-206ENST00000526262 NACADO15069 1562 aa14.05□□□□□ -0.16
PPFIA1-206ENST00000526262 RB1CC1Q8TDY2 1594 aa14.04□□□□□ -0.16
PPFIA1-206ENST00000526262 APLP2Q06481 763 aa13.89□□□□□ -0.19
PPFIA1-206ENST00000526262 UBTFP17480 764 aaKnown RBP13.88□□□□□ -0.19
PPFIA1-206ENST00000526262 RANGAP1P46060 587 aaPredicted RBP13.83□□□□□ -0.2
PPFIA1-206ENST00000526262 MYO15BQ96JP2 1530 aa13.81□□□□□ -0.2
PPFIA1-206ENST00000526262 LOC105371045A0A1W2PR82 267 aa13.81□□□□□ -0.2
PPFIA1-206ENST00000526262 PCGF6Q9BYE7 350 aa13.77□□□□□ -0.2
PPFIA1-206ENST00000526262 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
PPFIA1-206ENST00000526262 TTBK1Q5TCY1 1321 aaPredicted RBP13.74□□□□□ -0.21
PPFIA1-206ENST00000526262 CECR2Q9BXF3 1484 aa13.65□□□□□ -0.22
PPFIA1-206ENST00000526262 ATP1B4Q9UN42 357 aaPredicted RBP13.6□□□□□ -0.23
PPFIA1-206ENST00000526262 BAZ1AQ9NRL2 1556 aaPredicted RBP13.59□□□□□ -0.23
PPFIA1-206ENST00000526262 PPARGC1BQ86YN6 1023 aaKnown RBP13.55□□□□□ -0.24
PPFIA1-206ENST00000526262 MROH2BQ7Z745 1585 aa13.5□□□□□ -0.25
PPFIA1-206ENST00000526262 TRIM26Q12899 539 aaPredicted RBP13.49□□□□□ -0.25
PPFIA1-206ENST00000526262 BAZ1BQ9UIG0 1483 aaKnown RBP13.47□□□□□ -0.25
PPFIA1-206ENST00000526262 CSRNP3Q8WYN3 585 aa13.47□□□□□ -0.25
PPFIA1-206ENST00000526262 CCER1Q8TC90 406 aaPredicted RBP13.39□□□□□ -0.27
PPFIA1-206ENST00000526262 ZEB1P37275 1124 aaPredicted RBP13.35□□□□□ -0.27
PPFIA1-206ENST00000526262 WIZO95785 1651 aa13.3□□□□□ -0.28
PPFIA1-206ENST00000526262 SMARCA2P51531 1590 aa13.29□□□□□ -0.28
PPFIA1-206ENST00000526262 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
PPFIA1-206ENST00000526262 WRNQ14191 1432 aaPredicted RBP eCLIP13.28□□□□□ -0.28
PPFIA1-206ENST00000526262 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.26□□□□□ -0.29
PPFIA1-206ENST00000526262 HNRNPUL2Q1KMD3 747 aaKnown RBP13.26□□□□□ -0.29
PPFIA1-206ENST00000526262 SMARCA4P51532 1647 aa13.26□□□□□ -0.29
PPFIA1-206ENST00000526262 TOP2AP11388 1531 aaKnown RBP13.24□□□□□ -0.29
PPFIA1-206ENST00000526262 ATAD2BQ9ULI0 1458 aa13.23□□□□□ -0.29
PPFIA1-206ENST00000526262 ITGAEP38570 1179 aa13.21□□□□□ -0.3
PPFIA1-206ENST00000526262 FBLN2P98095 1184 aa13.2□□□□□ -0.3
PPFIA1-206ENST00000526262 EEA1Q15075 1411 aa13.18□□□□□ -0.3
PPFIA1-206ENST00000526262 HRCP23327 699 aa13.16□□□□□ -0.3
PPFIA1-206ENST00000526262 P3H3Q8IVL6 736 aa13.14□□□□□ -0.31
PPFIA1-206ENST00000526262 ABCC8Q09428 1581 aa13.08□□□□□ -0.32
PPFIA1-206ENST00000526262 KIF27Q86VH2 1401 aa13.07□□□□□ -0.32
PPFIA1-206ENST00000526262 GOLGA3Q08378 1498 aa13.05□□□□□ -0.32
PPFIA1-206ENST00000526262 SOGA1O94964 1423 aa13.05□□□□□ -0.32
PPFIA1-206ENST00000526262 FAM50AQ14320 339 aaKnown RBP13.05□□□□□ -0.32
PPFIA1-206ENST00000526262 CADPSQ9ULU8 1353 aa13.04□□□□□ -0.32
PPFIA1-206ENST00000526262 EIF4G1Q04637 1599 aaKnown RBP13.03□□□□□ -0.32
PPFIA1-206ENST00000526262 NCAPD3P42695 1498 aa13.02□□□□□ -0.33
PPFIA1-206ENST00000526262 BICRAQ9NZM4 1560 aa13.02□□□□□ -0.33
PPFIA1-206ENST00000526262 CLIP1P30622 1438 aa13.02□□□□□ -0.33
PPFIA1-206ENST00000526262 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
PPFIA1-206ENST00000526262 TNIKQ9UKE5 1360 aa13□□□□□ -0.33
PPFIA1-206ENST00000526262 CEP162Q5TB80 1403 aa13□□□□□ -0.33
PPFIA1-206ENST00000526262 PDS5BQ9NTI5 1447 aa12.97□□□□□ -0.33
PPFIA1-206ENST00000526262 ARID3CA6NKF2 412 aa12.96□□□□□ -0.33
PPFIA1-206ENST00000526262 CHMP7Q8WUX9 453 aaPredicted RBP12.95□□□□□ -0.34
PPFIA1-206ENST00000526262 ERCC6Q03468 1493 aa12.95□□□□□ -0.34
PPFIA1-206ENST00000526262 CUX2O14529 1486 aa12.95□□□□□ -0.34
PPFIA1-206ENST00000526262 MYT1LQ9UL68 1186 aa12.93□□□□□ -0.34
PPFIA1-206ENST00000526262 MYT1Q01538 1121 aa12.92□□□□□ -0.34
PPFIA1-206ENST00000526262 PELP1Q8IZL8 1130 aaKnown RBP12.9□□□□□ -0.34
PPFIA1-206ENST00000526262 CDK11AQ9UQ88 783 aaPredicted RBP12.9□□□□□ -0.34
PPFIA1-206ENST00000526262 CARMIL1Q5VZK9 1371 aa12.89□□□□□ -0.35
PPFIA1-206ENST00000526262 UNC13AQ9UPW8 1703 aa12.87□□□□□ -0.35
PPFIA1-206ENST00000526262 FANCD2Q9BXW9 1451 aa12.85□□□□□ -0.35
PPFIA1-206ENST00000526262 TRIM52Q96A61 297 aa12.83□□□□□ -0.36
PPFIA1-206ENST00000526262 HMGXB3Q12766 1538 aa12.82□□□□□ -0.36
PPFIA1-206ENST00000526262 TDRD9Q8NDG6 1382 aaKnown RBP12.82□□□□□ -0.36
PPFIA1-206ENST00000526262 CC2D2AQ9P2K1 1620 aa12.8□□□□□ -0.36
PPFIA1-206ENST00000526262 RUSC2Q8N2Y8 1516 aa12.8□□□□□ -0.36
PPFIA1-206ENST00000526262 MTUS2Q5JR59 1369 aa12.78□□□□□ -0.36
PPFIA1-206ENST00000526262 CFTRP13569 1480 aa12.78□□□□□ -0.36
PPFIA1-206ENST00000526262 ZNF777Q9ULD5 760 aaPredicted RBP12.77□□□□□ -0.37
PPFIA1-206ENST00000526262 NEUROD1Q13562 356 aa12.75□□□□□ -0.37
PPFIA1-206ENST00000526262 CENPBP07199 599 aaPredicted RBP12.74□□□□□ -0.37
PPFIA1-206ENST00000526262 PEG3Q9GZU2 1588 aa12.74□□□□□ -0.37
PPFIA1-206ENST00000526262 RAPGEF2Q9Y4G8 1499 aa12.72□□□□□ -0.37
PPFIA1-206ENST00000526262 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
PPFIA1-206ENST00000526262 FGD5Q6ZNL6 1462 aa12.7□□□□□ -0.38
PPFIA1-206ENST00000526262 FHAD1B1AJZ9 1412 aa12.69□□□□□ -0.38
PPFIA1-206ENST00000526262 NESP48681 1621 aa12.67□□□□□ -0.38
PPFIA1-206ENST00000526262 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
PPFIA1-206ENST00000526262 IGF1RP08069 1367 aa12.66□□□□□ -0.38
PPFIA1-206ENST00000526262 SYNJ1O43426 1573 aa12.65□□□□□ -0.38
PPFIA1-206ENST00000526262 YTHDC1Q96MU7 727 aaKnown RBP12.65□□□□□ -0.39
PPFIA1-206ENST00000526262 CHIC2Q9UKJ5 165 aa12.65□□□□□ -0.39
PPFIA1-206ENST00000526262 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
PPFIA1-206ENST00000526262 DIEXFQ68CQ4 756 aaKnown RBP12.64□□□□□ -0.39
PPFIA1-206ENST00000526262 RAD54L2Q9Y4B4 1467 aa12.64□□□□□ -0.39
PPFIA1-206ENST00000526262 DNAJC5BQ9UF47 199 aa12.63□□□□□ -0.39
PPFIA1-206ENST00000526262 POLR3GLQ9BT43 218 aa12.61□□□□□ -0.39
PPFIA1-206ENST00000526262 KANK4Q5T7N3 995 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms