RNA–Protein interactions for RNA: ENST00000519607.5

NUDCD1-203, Transcript of NudC domain containing 1, humanhuman

TSL 1 (best)

Gene NUDCD1, Length 2,286 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD1-203ENST00000519607 NISCHQ9Y2I1 1504 aa23.27■■□□□ 1.32
NUDCD1-203ENST00000519607 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
NUDCD1-203ENST00000519607 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
NUDCD1-203ENST00000519607 ZCCHC6Q5VYS8 1495 aaKnown RBP19.69■□□□□ 0.74
NUDCD1-203ENST00000519607 SUPT5HO00267 1087 aaKnown RBP19.47■□□□□ 0.71
NUDCD1-203ENST00000519607 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
NUDCD1-203ENST00000519607 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
NUDCD1-203ENST00000519607 CHIC1Q5VXU3 224 aa18.98■□□□□ 0.63
NUDCD1-203ENST00000519607 MYO15BQ96JP2 1530 aa18.83■□□□□ 0.6
NUDCD1-203ENST00000519607 ABCC9O60706 1549 aa18.6■□□□□ 0.57
NUDCD1-203ENST00000519607 HRCP23327 699 aa18.55■□□□□ 0.56
NUDCD1-203ENST00000519607 SCRIBQ14160 1630 aa18.49■□□□□ 0.55
NUDCD1-203ENST00000519607 PCGF6Q9BYE7 350 aa18.46■□□□□ 0.55
NUDCD1-203ENST00000519607 RSF1Q96T23 1441 aaPredicted RBP18.4■□□□□ 0.54
NUDCD1-203ENST00000519607 LOC105371045A0A1W2PR82 267 aa18.35■□□□□ 0.53
NUDCD1-203ENST00000519607 NACADO15069 1562 aa18.32■□□□□ 0.52
NUDCD1-203ENST00000519607 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
NUDCD1-203ENST00000519607 TRIM41Q8WV44 630 aa18.21■□□□□ 0.51
NUDCD1-203ENST00000519607 TRIM26Q12899 539 aaPredicted RBP18.19■□□□□ 0.5
NUDCD1-203ENST00000519607 CECR2Q9BXF3 1484 aa18.06■□□□□ 0.48
NUDCD1-203ENST00000519607 MROH2BQ7Z745 1585 aa18.04■□□□□ 0.48
NUDCD1-203ENST00000519607 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
NUDCD1-203ENST00000519607 WIZO95785 1651 aa17.97■□□□□ 0.47
NUDCD1-203ENST00000519607 FAM9AQ8IZU1 332 aaPredicted RBP17.96■□□□□ 0.47
NUDCD1-203ENST00000519607 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
NUDCD1-203ENST00000519607 BAZ1AQ9NRL2 1556 aaPredicted RBP17.92■□□□□ 0.46
NUDCD1-203ENST00000519607 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
NUDCD1-203ENST00000519607 EHMT2Q96KQ7 1210 aa17.74■□□□□ 0.43
NUDCD1-203ENST00000519607 EIF4G1Q04637 1599 aaKnown RBP17.73■□□□□ 0.43
NUDCD1-203ENST00000519607 SMARCA4P51532 1647 aa17.72■□□□□ 0.43
NUDCD1-203ENST00000519607 UNC13AQ9UPW8 1703 aa17.69■□□□□ 0.42
NUDCD1-203ENST00000519607 CCDC88BA6NC98 1476 aa17.62■□□□□ 0.41
NUDCD1-203ENST00000519607 SMARCA2P51531 1590 aa17.61■□□□□ 0.41
NUDCD1-203ENST00000519607 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
NUDCD1-203ENST00000519607 EEA1Q15075 1411 aa17.5■□□□□ 0.39
NUDCD1-203ENST00000519607 WRNQ14191 1432 aaPredicted RBP eCLIP17.46■□□□□ 0.38
NUDCD1-203ENST00000519607 TNIKQ9UKE5 1360 aa17.42■□□□□ 0.38
NUDCD1-203ENST00000519607 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
NUDCD1-203ENST00000519607 PEG3Q9GZU2 1588 aa17.4■□□□□ 0.38
NUDCD1-203ENST00000519607 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
NUDCD1-203ENST00000519607 CSRNP3Q8WYN3 585 aa17.4■□□□□ 0.38
NUDCD1-203ENST00000519607 SOGA1O94964 1423 aa17.4■□□□□ 0.38
NUDCD1-203ENST00000519607 CCER1Q8TC90 406 aaPredicted RBP17.39■□□□□ 0.37
NUDCD1-203ENST00000519607 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
NUDCD1-203ENST00000519607 UBTFP17480 764 aaKnown RBP17.35■□□□□ 0.37
NUDCD1-203ENST00000519607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.34■□□□□ 0.37
NUDCD1-203ENST00000519607 GOLGA3Q08378 1498 aa17.32■□□□□ 0.36
NUDCD1-203ENST00000519607 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
NUDCD1-203ENST00000519607 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
NUDCD1-203ENST00000519607 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
NUDCD1-203ENST00000519607 ATAD2BQ9ULI0 1458 aa17.22■□□□□ 0.35
NUDCD1-203ENST00000519607 BAZ1BQ9UIG0 1483 aaKnown RBP17.22■□□□□ 0.35
NUDCD1-203ENST00000519607 TTBK1Q5TCY1 1321 aaPredicted RBP17.21■□□□□ 0.35
NUDCD1-203ENST00000519607 KIF21BO75037 1637 aa17.21■□□□□ 0.35
NUDCD1-203ENST00000519607 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
NUDCD1-203ENST00000519607 CLIP1P30622 1438 aa17.1■□□□□ 0.33
NUDCD1-203ENST00000519607 DIEXFQ68CQ4 756 aaKnown RBP17.08■□□□□ 0.33
NUDCD1-203ENST00000519607 APLP2Q06481 763 aa17.07■□□□□ 0.32
NUDCD1-203ENST00000519607 SCAF1Q9H7N4 1312 aaKnown RBP17.05■□□□□ 0.32
NUDCD1-203ENST00000519607 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
NUDCD1-203ENST00000519607 TOP2BQ02880 1626 aa17.04■□□□□ 0.32
NUDCD1-203ENST00000519607 PELP1Q8IZL8 1130 aaKnown RBP17.03■□□□□ 0.32
NUDCD1-203ENST00000519607 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
NUDCD1-203ENST00000519607 BIVM-ERCC5R4GMW8 1640 aa16.99■□□□□ 0.31
NUDCD1-203ENST00000519607 CENPBP07199 599 aaPredicted RBP16.99■□□□□ 0.31
NUDCD1-203ENST00000519607 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
NUDCD1-203ENST00000519607 ZNF316A6NFI3 1004 aaPredicted RBP16.96■□□□□ 0.31
NUDCD1-203ENST00000519607 HMGXB3Q12766 1538 aa16.94■□□□□ 0.3
NUDCD1-203ENST00000519607 HNRNPUL2Q1KMD3 747 aaKnown RBP16.94■□□□□ 0.3
NUDCD1-203ENST00000519607 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
NUDCD1-203ENST00000519607 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
NUDCD1-203ENST00000519607 RANGAP1P46060 587 aaPredicted RBP16.87■□□□□ 0.29
NUDCD1-203ENST00000519607 NEUROD1Q13562 356 aa16.87■□□□□ 0.29
NUDCD1-203ENST00000519607 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
NUDCD1-203ENST00000519607 KIF27Q86VH2 1401 aa16.83■□□□□ 0.28
NUDCD1-203ENST00000519607 CUX1P39880 1505 aa16.8■□□□□ 0.28
NUDCD1-203ENST00000519607 CFTRP13569 1480 aa16.78■□□□□ 0.28
NUDCD1-203ENST00000519607 CLSPNQ9HAW4 1339 aa16.78■□□□□ 0.28
NUDCD1-203ENST00000519607 ARAP1Q96P48 1450 aa16.76■□□□□ 0.27
NUDCD1-203ENST00000519607 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
NUDCD1-203ENST00000519607 GTF3C3Q9Y5Q9 886 aa16.75■□□□□ 0.27
NUDCD1-203ENST00000519607 KANK4Q5T7N3 995 aaPredicted RBP16.66■□□□□ 0.26
NUDCD1-203ENST00000519607 RRBP1Q9P2E9 1410 aaKnown RBP16.65■□□□□ 0.26
NUDCD1-203ENST00000519607 MIER1Q8N108 512 aa16.64■□□□□ 0.25
NUDCD1-203ENST00000519607 DHX57Q6P158 1386 aaKnown RBP16.64■□□□□ 0.25
NUDCD1-203ENST00000519607 ARHGAP35Q9NRY4 1499 aa16.62■□□□□ 0.25
NUDCD1-203ENST00000519607 YTHDC1Q96MU7 727 aaKnown RBP16.61■□□□□ 0.25
NUDCD1-203ENST00000519607 CUX2O14529 1486 aa16.59■□□□□ 0.25
NUDCD1-203ENST00000519607 CCNB3Q8WWL7 1395 aa16.59■□□□□ 0.25
NUDCD1-203ENST00000519607 CADPSQ9ULU8 1353 aa16.58■□□□□ 0.25
NUDCD1-203ENST00000519607 IGF1RP08069 1367 aa16.57■□□□□ 0.24
NUDCD1-203ENST00000519607 CC2D2AQ9P2K1 1620 aa16.56■□□□□ 0.24
NUDCD1-203ENST00000519607 MAP3K1Q13233 1512 aa16.55■□□□□ 0.24
NUDCD1-203ENST00000519607 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
NUDCD1-203ENST00000519607 FGD5Q6ZNL6 1462 aa16.51■□□□□ 0.23
NUDCD1-203ENST00000519607 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
NUDCD1-203ENST00000519607 FHAD1B1AJZ9 1412 aa16.48■□□□□ 0.23
NUDCD1-203ENST00000519607 ITGAEP38570 1179 aa16.45■□□□□ 0.22
NUDCD1-203ENST00000519607 LRRC9Q6ZRR7 1453 aa16.43■□□□□ 0.22
NUDCD1-203ENST00000519607 FANCD2Q9BXW9 1451 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms