RNA–Protein interactions for RNA: ENST00000518842.1

LAMA4-211, Transcript of laminin subunit alpha 4, humanhuman

TSL 3

Gene LAMA4, Length 480 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-211ENST00000518842 AEBP2Q6ZN18 517 aaPredicted RBP27.96■■■□□ 2.07
LAMA4-211ENST00000518842 CHIC1Q5VXU3 224 aa26.4■■□□□ 1.82
LAMA4-211ENST00000518842 SENP3Q9H4L4 574 aaPredicted RBP24.04■■□□□ 1.44
LAMA4-211ENST00000518842 PHF23Q9BUL5 403 aaPredicted RBP23.62■■□□□ 1.37
LAMA4-211ENST00000518842 FOXD1Q16676 465 aa22.34■■□□□ 1.17
LAMA4-211ENST00000518842 NISCHQ9Y2I1 1504 aa22.33■■□□□ 1.17
LAMA4-211ENST00000518842 MSH5O43196 834 aa21.14■□□□□ 0.97
LAMA4-211ENST00000518842 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
LAMA4-211ENST00000518842 POTEDQ86YR6 584 aa20.97■□□□□ 0.95
LAMA4-211ENST00000518842 PIAS4Q8N2W9 510 aaPredicted RBP20.84■□□□□ 0.93
LAMA4-211ENST00000518842 PPP6R1Q9UPN7 881 aa20.62■□□□□ 0.89
LAMA4-211ENST00000518842 ADRA2BP18089 450 aa20.55■□□□□ 0.88
LAMA4-211ENST00000518842 CCDC180Q9P1Z9 1646 aa19.91■□□□□ 0.78
LAMA4-211ENST00000518842 ABCC9O60706 1549 aa19.71■□□□□ 0.75
LAMA4-211ENST00000518842 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
LAMA4-211ENST00000518842 DMRT2Q9Y5R5 561 aa18.99■□□□□ 0.63
LAMA4-211ENST00000518842 MAPK8IP2Q13387 824 aaPredicted RBP18.93■□□□□ 0.62
LAMA4-211ENST00000518842 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
LAMA4-211ENST00000518842 NACADO15069 1562 aa18.81■□□□□ 0.6
LAMA4-211ENST00000518842 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
LAMA4-211ENST00000518842 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
LAMA4-211ENST00000518842 ZCCHC6Q5VYS8 1495 aaKnown RBP18.58■□□□□ 0.56
LAMA4-211ENST00000518842 DCAF1Q9Y4B6 1507 aa18.5■□□□□ 0.55
LAMA4-211ENST00000518842 PABPN1Q86U42 306 aaKnown RBP eCLIP18.39■□□□□ 0.53
LAMA4-211ENST00000518842 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.53
LAMA4-211ENST00000518842 BICRAQ9NZM4 1560 aa18.35■□□□□ 0.53
LAMA4-211ENST00000518842 UNC13AQ9UPW8 1703 aa18.35■□□□□ 0.53
LAMA4-211ENST00000518842 PPP4R3CPQ6ZMV5 832 aa18.33■□□□□ 0.52
LAMA4-211ENST00000518842 CACNB1Q02641 598 aaPredicted RBP18.23■□□□□ 0.51
LAMA4-211ENST00000518842 HOXD11P31277 338 aaPredicted RBP18.2■□□□□ 0.5
LAMA4-211ENST00000518842 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
LAMA4-211ENST00000518842 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
LAMA4-211ENST00000518842 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
LAMA4-211ENST00000518842 CNKSR2Q8WXI2 1034 aa18.1■□□□□ 0.49
LAMA4-211ENST00000518842 RNF216Q9NWF9 866 aaPredicted RBP18.01■□□□□ 0.47
LAMA4-211ENST00000518842 RNF39Q9H2S5 420 aa17.94■□□□□ 0.46
LAMA4-211ENST00000518842 EIF4G1Q04637 1599 aaKnown RBP17.85■□□□□ 0.45
LAMA4-211ENST00000518842 CC2D2AQ9P2K1 1620 aa17.82■□□□□ 0.44
LAMA4-211ENST00000518842 CECR2Q9BXF3 1484 aa17.76■□□□□ 0.43
LAMA4-211ENST00000518842 C1QBPQ07021 282 aaKnown RBP17.73■□□□□ 0.43
LAMA4-211ENST00000518842 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
LAMA4-211ENST00000518842 NCAPD3P42695 1498 aa17.41■□□□□ 0.38
LAMA4-211ENST00000518842 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
LAMA4-211ENST00000518842 SMARCA4P51532 1647 aa17.34■□□□□ 0.37
LAMA4-211ENST00000518842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.33■□□□□ 0.36
LAMA4-211ENST00000518842 BAZ1AQ9NRL2 1556 aaPredicted RBP17.29■□□□□ 0.36
LAMA4-211ENST00000518842 SMARCA2P51531 1590 aa17.28■□□□□ 0.36
LAMA4-211ENST00000518842 NPM3O75607 178 aaKnown RBP17.27■□□□□ 0.36
LAMA4-211ENST00000518842 HMGXB3Q12766 1538 aa17.26■□□□□ 0.35
LAMA4-211ENST00000518842 PEG3Q9GZU2 1588 aa17.23■□□□□ 0.35
LAMA4-211ENST00000518842 MROH2BQ7Z745 1585 aa17.2■□□□□ 0.34
LAMA4-211ENST00000518842 BAZ1BQ9UIG0 1483 aaKnown RBP17.15■□□□□ 0.34
LAMA4-211ENST00000518842 NESP48681 1621 aa17.01■□□□□ 0.31
LAMA4-211ENST00000518842 ERCC6Q03468 1493 aa16.99■□□□□ 0.31
LAMA4-211ENST00000518842 CUX2O14529 1486 aa16.96■□□□□ 0.31
LAMA4-211ENST00000518842 RSF1Q96T23 1441 aaPredicted RBP16.94■□□□□ 0.3
LAMA4-211ENST00000518842 WIZO95785 1651 aa16.94■□□□□ 0.3
LAMA4-211ENST00000518842 LAMC3Q9Y6N6 1575 aa16.92■□□□□ 0.3
LAMA4-211ENST00000518842 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
LAMA4-211ENST00000518842 CADPSQ9ULU8 1353 aa16.87■□□□□ 0.29
LAMA4-211ENST00000518842 PDS5BQ9NTI5 1447 aa16.82■□□□□ 0.28
LAMA4-211ENST00000518842 THOC2Q8NI27 1593 aaKnown RBP16.81■□□□□ 0.28
LAMA4-211ENST00000518842 TOP2AP11388 1531 aaKnown RBP16.8■□□□□ 0.28
LAMA4-211ENST00000518842 CAPN15O75808 1086 aa16.73■□□□□ 0.27
LAMA4-211ENST00000518842 DNAJC5Q9H3Z4 198 aa16.73■□□□□ 0.27
LAMA4-211ENST00000518842 CFTRP13569 1480 aa16.73■□□□□ 0.27
LAMA4-211ENST00000518842 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
LAMA4-211ENST00000518842 DSG3P32926 999 aa16.69■□□□□ 0.26
LAMA4-211ENST00000518842 SPINK5Q9NQ38 1064 aaPredicted RBP16.69■□□□□ 0.26
LAMA4-211ENST00000518842 MRC2Q9UBG0 1479 aa16.67■□□□□ 0.26
LAMA4-211ENST00000518842 KCNA4P22459 653 aa16.66■□□□□ 0.26
LAMA4-211ENST00000518842 FANCD2Q9BXW9 1451 aa16.65■□□□□ 0.26
LAMA4-211ENST00000518842 WDR62O43379 1518 aa16.65■□□□□ 0.26
LAMA4-211ENST00000518842 CEP164Q9UPV0 1460 aa16.63■□□□□ 0.25
LAMA4-211ENST00000518842 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
LAMA4-211ENST00000518842 APLP2Q06481 763 aa16.58■□□□□ 0.24
LAMA4-211ENST00000518842 SLC4A2P04920 1241 aa16.54■□□□□ 0.24
LAMA4-211ENST00000518842 URB2Q14146 1524 aaKnown RBP16.51■□□□□ 0.23
LAMA4-211ENST00000518842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.47■□□□□ 0.23
LAMA4-211ENST00000518842 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
LAMA4-211ENST00000518842 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
LAMA4-211ENST00000518842 PRDM2Q13029 1718 aa16.42■□□□□ 0.22
LAMA4-211ENST00000518842 POTEHQ6S545 545 aa16.41■□□□□ 0.22
LAMA4-211ENST00000518842 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
LAMA4-211ENST00000518842 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
LAMA4-211ENST00000518842 SAMD1Q6SPF0 538 aaPredicted RBP16.33■□□□□ 0.2
LAMA4-211ENST00000518842 ABCC8Q09428 1581 aa16.32■□□□□ 0.2
LAMA4-211ENST00000518842 IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
LAMA4-211ENST00000518842 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
LAMA4-211ENST00000518842 ZNF608Q9ULD9 1512 aaPredicted RBP16.27■□□□□ 0.2
LAMA4-211ENST00000518842 ABCB7O75027 752 aa16.25■□□□□ 0.19
LAMA4-211ENST00000518842 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
LAMA4-211ENST00000518842 SUPT5HO00267 1087 aaKnown RBP16.21■□□□□ 0.19
LAMA4-211ENST00000518842 TARBP1Q13395 1621 aaKnown RBP16.19■□□□□ 0.18
LAMA4-211ENST00000518842 OSCARQ8IYS5 282 aa16.17■□□□□ 0.18
LAMA4-211ENST00000518842 EIF4G3O43432 1585 aaKnown RBP16.15■□□□□ 0.18
LAMA4-211ENST00000518842 CUX1P39880 1505 aa16.14■□□□□ 0.18
LAMA4-211ENST00000518842 AQRO60306 1485 aaKnown RBP eCLIP16.13■□□□□ 0.17
LAMA4-211ENST00000518842 RAD54L2Q9Y4B4 1467 aa16.13■□□□□ 0.17
LAMA4-211ENST00000518842 SOGA1O94964 1423 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms